SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene58866

Length: 269 nt

Origin of reads: Biogeco3 v1

UniGene Fasta

>sp_v2.0_unigene58866
AATGTAGATTGCTGCTGCATACGAGGTTTTATCTGATGATGAAAAGAGATCTTTGTATGACCAGTTTGGAGAGGAAGGTGTAAGAGGAACACGTGGAGATTCCTCTACTGGTCCATCTAGGGTTGATCCCTTTGATGTCTTTGAGTCAATATTTTCTGGAAGCAAAGGAGCATTTGATGGTTTTGGTGATATTGGAGGTACTAGCTTTAAAGTTCGACATGGTGGGCGTCAAAAGGGTGATGACATAAGGTTTGATTTGTCTCTGAGCT

Ace file of the UniGene sp_v2.0_unigene58866

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	molecular chaperone Hsp40/DnaJ family protein [Arabidopsis thaliana] gb\|ABJ17154.1\| At3g17830 [Arabidopsis thaliana] gb\|AEE76012.1\| molecular chaperone Hsp40/DnaJ family protein [Arabidopsis thaliana]	-	-	6.0e-15	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%
Blast2go	molecular chaperone hsp40 -like protein	-	-	1.28868e-20	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	1.28868e-20	65%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein DnaJ, cysteine-rich domain	IPR001305	-	-
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Chaperone DnaJ, C-terminal	IPR002939	-	-
Sma3	Heat shock protein DnaJ	IPR003095	-	-
Sma3	Chaperone DnaJ	IPR012724	-	-
Sma3		IPR015609	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A9P9

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 296 aas, your sequence is shorter than subject: 89 - 508

Fln protein: M*IAAAYEVLSDDEKRSLYDQFGEEGVRGTRGDSSTGPSRVDPFDVFESIFSGSKGAFDGFGDIGGTSFKVRHGGRQKGDDIRFDLSLS

Protein Length: 90

Fln nts: AATGTAGATTGCTGCTGCATACGAGGTTTTATCTGATGATGAAAAGAGATCTTTGTATGACCAGTTTGGAGAGGAAGGTGTAAGAGGAACACGTGGAGATTCCTCTACTGGTCCATCTAGGGTTGATCCCTTTGATGTCTTTGAGTCAATATTTTCTGGAAGCAAAGGAGCATTTGATGGTTTTGGTGATATTGGAGGTACTAGCTTTAAAGTTCGACATGGTGGGCGTCAAAAGGGTGATGACATAAGGTTTGATTTGTCTCTGAGCT

Fln Alignment:

AllPineV4_c59500___IAAAYEVLSDDEKRSLYDQFGEEGVRGTRGDSSTGPSRVDPFDVFESIFSGSKGAFDGFGDIGGTSFKVRHGGRQK-----GDDIRFDLSL
D5A9P9_______________ISTAYEVLSDDEKRSLYDQYGEVGVKGAA--ASSGAYTTNPFDLFETFFGSNVRGFPGMDQTG-------FGARRRETVFQGDDIRYDMML

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain