SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene58809

Length: 197 nt

UniGene Fasta

>sp_v2.0_unigene58809
AATGTCTATTGTGTCAACTCCACCTCCACTTCCACCCACTGTACCAGGTAAATCTCTTCCCCTGCCTCCGCCTCCACCTCCACCTTTGAATGCTAGTAAAGCCTTGCGCCCAAGGAGATCAAATACAAAGTTGAAGAGATCAAATCAGATGGGTAACCTCTATAGAGTTTTGAAGGGCAAAGTGGAGGGGGCTGGCC

Ace file of the UniGene sp_v2.0_unigene58809

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	hydroxyproline-rich glycoprotein-like protein [Arabidopsis thaliana] gb\|AAG51656.1\|AC018908_22 hypothetical protein; 92104-88279 [Arabidopsis thaliana] gb\|AEE33775.1\| hydroxyproline-rich glycoprotein-like protein [Arabidopsis thaliana]	-	-	3.0e-06	69%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	75%

Source	InterPros	Term	Type	e value	Identity
Sma3	Domain of unknown function DUF292, eukaryotic	IPR005061	-	0.0	-
Sma3		IPR010847	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9H259

Fln msg: Distance to subject end: 225 aas, your sequence is shorter than subject: 65 - 788

Fln protein: MSIVSTPPPLPPTVPGKSLPLPPPPPPPLNASKALRPRRSNTKLKRSNQMGNLYRVLKGKVEGAG

Protein Length: 66

Fln nts: AATGTCTATTGTGTCAACTCCACCTCCACTTCCACCCACTGTACCAGGTAAATCTCTTCCCCTGCCTCCGCCTCCACCTCCACCTTTGAATGCTAGTAAAGCCTTGCGCCCAAGGAGATCAAATACAAAGTTGAAGAGATCAAATCAGATGGGTAACCTCTATAGAGTTTTGAAGGGCAAAGTGGAGGGGGCTGGCC

Fln Alignment:

AllPineV4_c59432___ASKALRPRRSNTKLKRSNQMGNLYRVLKGKVEG
B9H259_______________AARSLRPKKAQTKLKRSSQMGNLYRVLKGKVEG

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
97		33		66	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain