SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene58697

Length: 370 nt

UniGene Fasta

>sp_v2.0_unigene58697
CAGAAACAACAAGGCTGCCTGAAGTGCAGGATTTTGTGTGGGTAACTGGCCATGGTGTTAGGGCTGTAGTTCACAACAAGAATATTCTTGTGGGTAACATTAAGCTGATGTTAGATTCCGGAATCTCTGTTTCTGAAGATGCCTATGACATTTTGAATGAGGCTGAGGGGATGGCTCGAACGGCGGTTTTTGTGTCTATTGACAGAGAGTTGGTTGCAATTATCACAATATCAGATTCAGTTAGGCCAGAAGCAAAGGAGGTGGTGTCTATTTTGAAATTGATGAAAATTAAATGCATTATGGTCACAGGAGACAACTGGAGTACTGCAAAAGCCATTGCCAAGGACGTTGGAATTGAGACTGTCCATGC

Ace file of the UniGene sp_v2.0_unigene58697

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Heavy metal ATPase n=1 Tax=Populus trichocarpa RepID=B9GWH1_POPTR	-	-	3.0e-34	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%
Blast2go	copper-transporting atpase 3-like	-	-	1.50295e-39	75%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, P-type, H+ transporting proton pump	IPR000695	-	-
Sma3		IPR001756	-	-
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3		IPR001877	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	Heavy metal-associated domain, HMA	IPR006121	-	-
Sma3	Heavy metal-associated domain, copper ion-binding	IPR006122	-	-
Sma3	ATPase, P type, cation/copper-transporter	IPR006403	-	-
Sma3	ATPase, P-type, heavy metal translocating	IPR006416	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	Heavy-metal-associated, conserved site	IPR017969	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ20

Fln msg: Distance to subject end: 150 aas, your sequence is shorter than subject: 122 - 998

Fln protein: ETTRLPEVQDFVWVTGHGVRAVVHNKNILVGNIKLMLDSGISVSEDAYDILNEAEGMARTAVFVSIDRELVAIITISDSVRPEAKEVVSILKLMKIKCIMVTGDNWSTAKAIAKDVGIETVH

Protein Length: 123

Fln nts: CAGAAACAACAAGGCTGCCTGAAGTGCAGGATTTTGTGTGGGTAACTGGCCATGGTGTTAGGGCTGTAGTTCACAACAAGAATATTCTTGTGGGTAACATTAAGCTGATGTTAGATTCCGGAATCTCTGTTTCTGAAGATGCCTATGACATTTTGAATGAGGCTGAGGGGATGGCTCGAACGGCGGTTTTTGTGTCTATTGACAGAGAGTTGGTTGCAATTATCACAATATCAGATTCAGTTAGGCCAGAAGCAAAGGAGGTGGTGTCTATTTTGAAATTGATGAAAATTAAATGCATTATGGTCACAGGAGACAACTGGAGTACTGCAAAAGCCATTGCCAAGGACGTTGGAATTGAGACTGTCCATGC

Fln Alignment:

AllPineV4_c59299___TTRLPEVQDFVWVTGHGVRAVVHNKNILVGNIKLMLDSGISVSEDAYDILNEAEGMARTAVFVSIDRELVAIITISDSVRPEAKEVVSILKLMKIKCIMVTGDNWSTAKAIAKDVGIETV
B8LQ20_______________TAWLLTASKFEALPGKGVRCSIEGTEILVGNRKLMSEDGVFIPSVAEEYLKDMEQHARTGILVAFDKELVGMLAISDPLKREAAVVIEGLKKMGILPIMVTGDNWTTARAVAQELGIEDV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain