SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene58626

Length: 382 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene58626
ATTGGAATGTTGAGCATTGGTTATGTCTGGATAGCCACAGATTGGCTATCTTCTGTTTTAGATTCTAGTCTACTTGAAGTTGACAACATGGAGTCGCTTCAAGGGTTAATTAGCCTGCGTCCACATACTCCAAATTCAGGGCAGCAGCATGTGTTGAGACAAAGATGGAAAAATTTACAAACAGCCAATATGGTTAATGTCTCTTTCAATGCATTTGGTTTGTATGCCTATGACAGTATCTTGATGATTGCTCATTCTCTCAATGACACTTGAACCAAGGAGGAAAGATCTCTTTTGCAGAACAATATACTCTGTCAAGTGCTAGTGGAAGCAAGTTAGAACTAGCAAAACTGAAGGTCTTTAAAGGAGGAGCACAGTTACG

Ace file of the UniGene sp_v2.0_unigene58626 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glutamate receptor n=1 Tax=Ricinus communis RepID=B9SDW0_RICCO	-	-	5.0e-16	37%
FL-Next	sp=Glutamate receptor 3.3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	44%
Blast2go	glutamate receptor	-	-	2.71883e-16	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	calcium ion transmembrane transport	GO:0070588	Biological Process	2.71883e-16	66%
Blast2go	gravitropism	GO:0009630	Biological Process	2.71883e-16	66%
Blast2go	calcium channel activity	GO:0005262	Molecular Function	2.71883e-16	66%
Blast2go	glutamate receptor activity	GO:0008066	Molecular Function	2.71883e-16	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9C8E7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 566 aas, your sequence is shorter than subject: 91 - 933

Fln protein: IGMLSIGYVWIATDWLSSVLDSSLLEVDNMESLQGLISLRPHTPNSGQQHVLRQRWKNLQTANMVNVSFNAFGLYAYDSILMIAHSLNDT*

Protein Length: 92

Fln nts: ATTGGAATGTTGAGCATTGGTTATGTCTGGATAGCCACAGATTGGCTATCTTCTGTTTTAGATTCTAGTCTACTTGAAGTTGACAACATGGAGTCGCTTCAAGGGTTAATTAGCCTGCGTCCACATACTCCAAATTCAGGGCAGCAGCATGTGTTGAGACAAAGATGGAAAAATTTACAAACAGCCAATATGGTTAATGTCTCTTTCAATGCATTTGGTTTGTATGCCTATGACAGTATCTTGATGATTGCTCATTCTCTCAATGACACTTGAACCAAGGAGGAAAGATCTCTTTTGCAGAACAATATACTCTGTCAAGTGCTAGTGGAAGCAAGTTAGAACTAGCAAAACTGAAGGTCTTTAAAGGAGGAGCACAGTTACG

Fln Alignment:

AllPineV4_c59214___IGMLSIGYVWIATDWXXXXXXXXXXXXDN-MESLQGLISLRPHTPNSGQQHVLRQRWKNLQTANMVNVSFNAFGLYAYDSILMIAHSLN
Q9C8E7_______________LGMMGNGYVWIATDWLSTNLDSSSPLPAERLETIQGVLVLRPHTPDSDFKREFFKRWRKMSGASL---ALNTYGLYAYDSVMLLARGLD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain