SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene58535

Length: 291 nt

UniGene Fasta

>sp_v2.0_unigene58535
AATGTGGGCAATGGCCTTATAGATATGTATGCCAAATGTGGGATTGTAGAGAGTGCATGCAAAGTGTTTGAAAAAATGCCCAAGAGAAGTGTAGTATCATGGACTGCAATGATTGGAGGATACGCCATGAATGGCTTTGGAAAAGAGGCTCTCCAAGTCTTTAAGCAGATGCAACTCTCTGGCACAAACCCAGATGCTGTCACCTTTGTCGGTGTCCTCTCTGCATGCTGCCATGCAGGCCTGGTATATGATGGGTATCAATACTTTGATTCCATGACTAAAACTATAACA

Ace file of the UniGene sp_v2.0_unigene58535

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9SIT7.1\|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600 gb\|AAD22682.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEC06244.1\| pentatricopeptide repe	-	-	4.0e-25	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Blast2go	pentatricopeptide repeat-containing protein	-	-	3.39446e-38	74%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Alpha-isopropylmalate/homocitrate synthase, conserved site	IPR002034	-	-
Sma3	Smr protein/MutS2 C-terminal	IPR002625	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Domain of unknown function DUF221	IPR003864	-	-
Sma3	DNA repair protein (XPGC)/yeast Rad	IPR006084	-	-
Sma3	XPG N-terminal	IPR006085	-	-
Sma3	XPG/RAD2 endonuclease	IPR006086	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Helix-hairpin-helix motif, class 2	IPR008918	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Domain of unknown function DUF1771	IPR013899	-	-
Sma3		IPR017442	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3		IPR018169	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	PDZ-binding protein, CRIPT	IPR019367	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AB53

Fln msg: Distance to subject end: 62 aas, your sequence is shorter than subject: 89 - 232

Fln protein: MYAKCGIVESACKVFEKMPKRSVVSWTAMIGGYAMNGFGKEALQVFKQMQLSGTNPDAVTFVGVLSACCHAGLVYDGYQYFDSMTKTIT

Protein Length: 90

Fln nts: AATGTGGGCAATGGCCTTATAGAT_-_ATGTATGCCAAATGTGGGATTGTAGAGAGTGCATGCAAAGTGTTTGAAAAAATGCCCAAGAGAAGTGTAGTATCATGGACTGCAATGATTGGAGGATACGCCATGAATGGCTTTGGAAAAGAGGCTCTCCAAGTCTTTAAGCAGATGCAACTCTCTGGCACAAACCCAGATGCTGTCACCTTTGTCGGTGTCCTCTCTGCATGCTGCCATGCAGGCCTGGTATATGATGGGTATCAATACTTTGATTCCATGACTAAAACTATAACA

Fln Alignment:

AllPineV4_c59106___VGNGLIDMYAKCGIVESACKVFEKMPKRSVVSWTAMIGGYAMNGFGKEALQVFKQMQLSGTNPDAVTFVGVLSACCHAGLVYDGYQYFDSMT
D5AB53_______________VGSTLIDMYAKCSSIGDASKVFDGMSTRNVVSWNAMIAAYAIHGCGKQALDLFEQMKHSDTSPNQVTFVGVLSACCHAGLVSEGRQYFNSMS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain