SustainPineDB

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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene58479

Length: 318 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene58479
GATGCAGATTGAAGACGTCGTGTATCCCCAATATGCGTGCCCAAAGTTTACAAAGACGACTAATATAATAATGGCGTTTGCAATTACAATGATTTGGTGAGGAACCGCAACATCTCCAAGGTGCCTCCCCACGCCTTCGTTCAGTTCGCAGCTCCGGGTGCTGTGAAACAGGCGGCGAAGCTCAGTGAACGTGGGAGGCTCATATTCCGAGGCTGTGCTCTCAAGGTCAGGGTTGGTAACGAAACCTCCTCTAAATCGCAAAGAAGGAAAGAAACTCCCCTCCTTAGATTTTCTTCTGTTCAACTTGAAATCGACATT

Ace file of the UniGene sp_v2.0_unigene58479 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Probable RNA-dependent RNA polymerase SHL2 n=1 Tax=Oryza sativa Japonica Group RepID=SHL2_ORYSJ	-	-	4.0e-06	43%
FL-Next	sp=Probable RNA-dependent RNA polymerase SHL2; Oryza sativa subsp. japonica (Rice).	-	-	0.0	43%
Blast2go	shl2_orysj ame: full=probable rna-dependent rna polymerase shl2 ame: full=protein shootless 2	-	-	3.7925e-07	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8LHH9

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 1057 aas, your sequence is shorter than subject: 106 - 1218

Fln protein: DAD*RRRVSPICVPKVYKDD*YNNGVCNYNDLVRNRNISKVPPHAFVQFAAPGAVKQAAKLSERGRLIFRGCALKVRVGNETSSKSQRRKETPLLRFSSVQLEIDI

Protein Length: 107

Fln nts: GATGCAGATTGAAGACGTCGTGTATCCCCAATATGCGTGCCCAAAGTTTACAAAGACGACTAATATAATAATGGCGTTTGCAATTACAATGATTTGGTGAGGAACCGCAACATCTCCAAGGTGCCTCCCCACGCCTTCGTTCAGTTCGCAGCTCCGGGTGCTGTGAAACAGGCGGCGAAGCTCAGTGAACGTGGGAGGCTCATATTCCGAGGCTGTGCTCTCAAGGTCAGGGTTGGTAACGAAACCTCCTCTAAATCGCAAAGAAGGAAAGAAACTCCCCTCCTTAGATTTTCTTCTGTTCAACTTGAAATCGACATT

Fln Alignment:

AllPineV4_c59042___KVPPHAFVQFAAPGAVKQAAKLSERGRLIFRGCALKVRVGNETSSKSQRRKETPLLRFSSVQLEI
Q8LHH9_______________RVPPHAFVHFARPEGARRAADLAGETRLILRGKPLRVASAPDSSLRVSRRSSIAPFRFPDVRLEV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain