SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene58194

Length: 330 nt

Origin of reads: Biogeco3 v1

UniGene Fasta

>sp_v2.0_unigene58194
ACTGCTGATAAGCCTATTACTGTAGAGTATGCCAATGATATCCCTGGAACTGCCTTTGGGGAACCTAACGAGAAATTTTTACCACCATCATCTGCGCCACAGGAGAGAAAAGTATCTGCGCCACAGGAGGGAAAAATACAGTACCAAAGGAAACACAGGCAAAAAGAGGGCTCTCAGAATTCATGTTTGGACCTCTCAAACACTGCTTGGAATATGCGGATTGCCTCATTATCAGAAGGGTCATTGCTCCGTTATATGCCCGATGAGGTGCCGGGAGTTACTCCCCAATGGTTTACATTGCGATGTTGTTCAGTTGGTTGCTTGGCATGT

Ace file of the UniGene sp_v2.0_unigene58194

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	relative of early flowering 6 protein [Arabidopsis thaliana] emb\|CAB41155.1\| putative zinc finger protein [Arabidopsis thaliana] gb\|AAT77779.1\| relative of early flowering 6 [Arabidopsis thaliana] gb\|AEE78416.1\| relative of early flowering 6 protein [Arab	-	-	1.0e-12	40%
FL-Next	sp=Lysine-specific demethylase REF6; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	40%
Blast2go	lysine-specific demethylase ref6-like	-	-	1.55374e-16	52%

Source	GOs	Term	Type	e value	Identity
Blast2go	anatomical structure development	GO:0048856	Biological Process	1.55374e-16	52%
Blast2go	histone modification	GO:0016570	Biological Process	1.55374e-16	52%
Blast2go	biological regulation	GO:0065007	Biological Process	1.55374e-16	52%
Blast2go	multicellular organismal development	GO:0007275	Biological Process	1.55374e-16	52%
Blast2go	binding	GO:0005488	Molecular Function	1.55374e-16	52%
Blast2go	intracellular	GO:0005622	Cellular Component	1.55374e-16	52%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9STM3

Fln msg: Overlapping hits, possible frame ERROR between 282 and 273, Distance to subject end: 1114 aas, your sequence is shorter than subject: 110 - 1360

Fln protein: TADKPITVEYANDIPGTAFGEPNEKFLPPSSAPQERKVSAPQEGKIQYQRKHRQKEGSQNSCLDLSNTAWNMRIASLSEGSLLRYMPDEVxxxxxPMVYIAMLFSWLLGM

Protein Length: 111

Fln nts: ACTGCTGATAAGCCTATTACTGTAGAGTATGCCAATGATATCCCTGGAACTGCCTTTGGGGAACCTAACGAGAAATTTTTACCACCATCATCTGCGCCACAGGAGAGAAAAGTATCTGCGCCACAGGAGGGAAAAATACAGTACCAAAGGAAACACAGGCAAAAAGAGGGCTCTCAGAATTCATGTTTGGACCTCTCAAACACTGCTTGGAATATGCGGATTGCCTCATTATCAGAAGGGTCATTGCTCCGTTATATGCCCGATGAGGTGxxxxxxxxxxxxxxxCCAATGGTTTACATTGCGATGTTGTTCAGTTGGTTGCTTGGCATGT

Fln Alignment:

AllPineV4_c58712___TADKPITVEYANDIPGTAFGEPNEKFLPPSSAPQERKVSAPQEGKIQYQRKHRQKEGSQNSCLDLSNTAWNMRIASLSEGSLLRYMPDEVPxxxSPMVYIAMLFSW
Q9STM3_______________TVDKPFSVEYANDMPGSAF-------IPLSLAAARRRESGGEGGTV-------------------GETAWNMRAMSRAEGSLLKFMKEEIPxxxSPMVYVAMMFSW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain