SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene58151

Length: 432 nt

Origin of reads: Biogeco3 v1

UniGene Fasta

>sp_v2.0_unigene58151
TTTACTGTGAAAACAGGAAGGATTTTTGATGCTAAAGATCAACTAGCTATCAAGGCTGAGACACGTCCAAAAAATGACAAAGCAGTCCCACATATAGACCCTGCTATCTGTAGCAACATGTTGAAGGGTAAACAAACTTGTGGAGCCTCGGGCAGAGATGTATTTGATTTCAAAGATTCTGTCCTCAAGGTTGATGAGCTTCAAAATGAAGCTTTGAGATCATCTTGGGGAAAAGCAAGACTCAAGGGAAGTAATTCCAAGGAAAAGAATCACGGGATGAAGGGATTAAAGCGTAGTGCAACGAAAGTACTTCTTATTAGCAAGGCACCACACATTCTAACTATTCATTTAAAGAGGTTCACCCATGGCCTTGTCAAATTGAACGGCCATGTTACTTTTCAAGAGAAGCTTGACTTGAGGCCATTCCACATT

Ace file of the UniGene sp_v2.0_unigene58151

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ubiquitin carboxyl-terminal hydrolase 2 [Arabidopsis thaliana] sp\|Q8W4N3.2\|UBP2_ARATH RecName: Full=Ubiquitin carboxyl-terminal hydrolase 2; AltName: Full=Deubiquitinating enzyme 2; Short=AtUBP2; AltName: Full=Ubiquitin thiolesterase 2; AltName: Full=Ubiq	-	-	1.0e-07	58%
FL-Next	sp=Ubiquitin carboxyl-terminal hydrolase 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	58%
Blast2go	protein	-	-	2.27539e-11	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	ubiquitin-specific protease activity	GO:0004843	Molecular Function	2.27539e-11	65%
Blast2go	chloroplast	GO:0009507	Cellular Component	2.27539e-11	65%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2	IPR001394	-	0.0	-
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site	IPR018200	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8W4N3

Fln msg: Distance to subject end: 81 aas, your sequence is shorter than subject: 144 - 961

Fln protein: FTVKTGRIFDAKDQLAIKAETRPKNDKAVPHIDPAICSNMLKGKQTCGASGRDVFDFKDSVLKVDELQNEALRSSWGKARLKGSNSKEKNHGMKGLKRSATKVLLISKAPHILTIHLKRFTHGLVKLNGHVTFQEKLDLRPFHI

Protein Length: 145

Fln nts: TTTACTGTGAAAACAGGAAGGATTTTTGATGCTAAAGATCAACTAGCTATCAAGGCTGAGACACGTCCAAAAAATGACAAAGCAGTCCCACATATAGACCCTGCTATCTGTAGCAACATGTTGAAGGGTAAACAAACTTGTGGAGCCTCGGGCAGAGATGTATTTGATTTCAAAGATTCTGTCCTCAAGGTTGATGAGCTTCAAAATGAAGCTTTGAGATCATCTTGGGGAAAAGCAAGACTCAAGGGAAGTAATTCCAAGGAAAAGAATCACGGGATGAAGGGATTAAAGCGTAGTGCAACGAAAGTACTTCTTATTAGCAAGGCACCACACATTCTAACTATTCATTTAAAGAGGTTCACCCATGGCCTTGTCAAATTGAACGGCCATGTTACTTTTCAAGAGAAGCTTGACTTGAGGCCATTCCACATT

Fln Alignment:

AllPineV4_c58665___LKRSATKVLLISKAPHILTIHLKRFTHG----LVKLNGHVTFQEKLDLRPF
Q8W4N3_______________VKRDATKKVLINKAPPVLTIHLKRFSQDLRGRLSKLNGHVAFKEVIDLRQY

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
268	66			33	0.997458

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain