SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene58105

Length: 186 nt

Origin of reads: Biogeco3 v1

UniGene Fasta

>sp_v2.0_unigene58105
AATGTCATATAGATAGCCACATTTGCCAGATATGTGGAGAGGATGTTGGCTTAGCAGCAGATGGGGAGTTCTTTGTAGCTTGCAATGAGTGTGCATTTCCAGTTTGCAGGCCTTGCTATGAATATGAGTGGAAGGATGGAAATCAATCTTGTCCACAATGCAAGACTAGATACAAGTGGCATAAAG

Ace file of the UniGene sp_v2.0_unigene58105

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cellulose synthase n=1 Tax=Pinus radiata RepID=Q4VWW7_PINRA	-	-	6.0e-33	98%
FL-Next	tr=Cellulose synthase; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	0.0	98%
Blast2go	family 2 glycosyltransferase	-	-	3.6565e-39	87%

Source	InterPros	Term	Type	Identity
Sma3	Pyridine nucleotide-disulphide oxidoreductase, class-II	IPR000103	-	-
Sma3	HIV negative factor Nef	IPR001558	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	Cellulose synthase	IPR005150	-	-
Sma3	bZIP transcription factor, bZIP-1	IPR011616	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Gonadotropin, beta subunit, conserved site	IPR018245	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q4VWW7

Fln msg: Distance to subject end: 1004 aas, your sequence is shorter than subject: 61 - 1096

Fln protein: CHIDSHICQICGEDVGLAADGEFFVACNECAFPVCRPCYEYEWKDGNQSCPQCKTRYKWHK

Protein Length: 62

Fln nts: AATGTCATATAGATAGCCACATTTGCCAGATATGTGGAGAGGATGTTGGCTTAGCAGCAGATGGGGAGTTCTTTGTAGCTTGCAATGAGTGTGCATTTCCAGTTTGCAGGCCTTGCTATGAATATGAGTGGAAGGATGGAAATCAATCTTGTCCACAATGCAAGACTAGATACAAGTGGCATAAAG

Fln Alignment:

AllPineV4_c58603___HIDSHICQICGEDVGLAADGEFFVACNECAFPVCRPCYEYEWKDGNQSCPQCKTRYKWHK
Q4VWW7_______________HINSHICQICGEDVGLAADGEFFVACNECAFPVCRPCYEYEWKDGNQSCPQCKTRYKWHK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain