SustainPineDB

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Assembly info
Unigenes
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene58055

Length: 326 nt

Origin of reads: Biogeco3 v1

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene58055
GATGTCATGACTGAAAAATACGAGTCCATCATCAAGAATGATGTCTAGGAAGTGGTTCCTAGACCTCAAGGTAAATCTGTGGTCACTTCCAAATGGTTGTTTAAGATTAAACATGGTGCAGAAGGTAGTATTGAAAAATATAAGGTTATATTTGTAGCTAGAGGTTTCTCTCAGAAAGAGGGAATAGATTATGATGAGATTTTTGCACCTGTAGCTCGATATACTACTATTTGATCTGTTGTTGCCTTAGCTGCTAGTCAGGGATGGACTCTTCACCAAATGGACGTGAAAACTGCTTTCTTGCATGGCTTCCTCAAGAAAACATT

Ace file of the UniGene sp_v2.0_unigene58055 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Oryza sativa Japonica Group RepID=Q2RBA0_ORYSJ	-	-	1.0e-25	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Blast2go	retrotransposon ty1-copia subclass	-	-	8.22887e-30	73%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	GHMP kinase N-terminal domain	IPR006204	-	-
Sma3	Mevalonate/galactokinase	IPR006206	-	-
Sma3	DNA helicase PIF1, ATP-dependent	IPR010285	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	GHMP kinase, C-terminal domain	IPR013750	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKV8

Fln msg: Distance to subject end: 256 aas, your sequence is shorter than subject: 106 - 363

Fln protein: MTEKYESIIKNDV*EVVPRPQGKSVVTSKWLFKIKHGAEGSIEKYKVIFVARGFSQKEGIDYDEIFAPVARYTTI*SVVALAASQGWTLHQMDVKTAFLHGFLKKT

Protein Length: 107

Fln nts: GATGTC_-_ATGACTGAAAAATACGAGTCCATCATCAAGAATGATGTCTAGGAAGTGGTTCCTAGACCTCAAGGTAAATCTGTGGTCACTTCCAAATGGTTGTTTAAGATTAAACATGGTGCAGAAGGTAGTATTGAAAAATATAAGGTTATATTTGTAGCTAGAGGTTTCTCTCAGAAAGAGGGAATAGATTATGATGAGATTTTTGCACCTGTAGCTCGATATACTACTATTTGATCTGTTGTTGCCTTAGCTGCTAGTCAGGGATGGACTCTTCACCAAATGGACGTGAAAACTGCTTTCTTGCATGGCTTCCTCAAGAAAACATT

Fln Alignment:

AllPineV4_c58547___MTEKYESIIKNDV*EVVPRPQGKSVVTSKWLFKIKHGAEGSIEKYKVIFVARGFSQKEGIDYDEIFAPVARYTTI*SVVALAASQGWTLHQMDVKTAFLHGFLKK
B8LKV8_______________MNKEMESIKKNDTWDLVDLPKEKECISVKWVYKTKYKANGELDKHKARLVAKGFAQEYGVDYNETFAPVARLDTIRMVLAIAAQHNWKVYQMDVKSAFLNGYLEE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain