SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene57978

Length: 286 nt

UniGene Fasta

>sp_v2.0_unigene57978
GAAGGTTGAAAGGCAGAATGAAGCTGAGCTTAAAGAAACTATAAAAGTGCCTAAAGCTACATGGATGGCTGATGGTACTCACTGGCCAGGAACGTGGACAGTTGCCAGCAAGGAACATTCACGGGGAGACCATGCTGGAATCATTCAGGTTATGCTTAAACCTCCTAGTGATGAACCGCTTATGGCACTGTGGATGATAAAGTCATCGACTTTAGTGATGTGGATATCCGTTTGCCTATGCTAGTGTATGTATCACGTGAGAAACGGCCAGGGTATGATCACAACA

Ace file of the UniGene sp_v2.0_unigene57978

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cellulose synthase-like protein D4 [Arabidopsis thaliana] sp\|Q9SZL9.1\|CSLD4_ARATH RecName: Full=Cellulose synthase-like protein D4; Short=AtCslD4 emb\|CAB37559.1\| putative protein [Arabidopsis thaliana] emb\|CAB80484.1\| putative protein [Arabidopsis thalian	-	-	2.0e-32	65%
FL-Next	tr=Cellulose synthase catalytic subunit; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	0.0	48%
Blast2go	cellulose synthase-like protein d3-like	-	-	1.11736e-33	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	pollen germination	GO:0009846	Biological Process	1.11736e-33	84%
Blast2go	transferase activity	GO:0016740	Molecular Function	1.11736e-33	84%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	1.11736e-33	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	Cellulose synthase	IPR005150	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q6GUG6

Fln msg: Separated hits, possible frame ERROR between 157 and 232, Distance to subject end: 538 aas, your sequence is shorter than subject: 95 - 1084

Fln protein: KVERQNEAELKETIKVPKATWMADGTHWPGTWTVASKEHSRGDHAGIIQVMxxxxxxxxxxxxxxxxxxxxxxxxxxLPMLVYVSREKRPGYDHN

Protein Length: 96

Fln nts: GAAGGTTGAAAGGCAGAATGAAGCTGAGCTTAAAGAAACTATAAAAGTGCCTAAAGCTACATGGATGGCTGATGGTACTCACTGGCCAGGAACGTGGACAGTTGCCAGCAAGGAACATTCACGGGGAGACCATGCTGGAATCATTCAGGTTATGCTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTTTGCCTATGCTAGTGTATGTATCACGTGAGAAACGGCCAGGGTATGATCACAACA

Fln Alignment:

AllPineV4_c58458___KVPKATW-MADGTHWPGTWTVASKEHSRGDHAGIIQVMLxxxxxxxxxxxxxxxxxxxxxxxxxLPMLVYVSREKRPGYDHN
Q6GUG6_______________KVPKEGWTMQDGTPWPG--------NNTRDHPGMIQVFLxxxxxxxxxxxxxxxxxxxxxxxxxLPRLVYVSREKRPGFQHH

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain