SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene57788

Length: 238 nt

UniGene Fasta

>sp_v2.0_unigene57788
CGTCGTGACCTTGGCTGTCACTCAGTTCACAAAGCTGTTACAAGAGATGGTATGGAGGTTGCAATGAAGATTCAATATCCTGGTGTGGCAGAGAGTATAGATAGTGACATAGAAAATGTTAAACGGCTTCTTGATTACACCAACCTCTTGCCAAACGGGCTCTATCTTGACCAAGCTATGAAGGTGGCAAAAGTGGAGCTTGCTAGGGAATGCAATTATGAGCTGGAAGCAGCAAACC

Ace file of the UniGene sp_v2.0_unigene57788

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ABC transporter 1 [Arabidopsis thaliana] gb\|AAC72875.1\| Arabidopsis thaliana ABC1 protein (GB:AJ001158) emb\|CAB77736.1\| putative ABC transporter [Arabidopsis thaliana] gb\|AEE82058.1\| ABC transporter 1 [Arabidopsis thaliana]	-	-	1.0e-24	74%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	83%
Blast2go	chaperone activity of bc1 complex- mitochondrial-like	-	-	5.66417e-33	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular iron ion homeostasis	GO:0006879	Biological Process	5.66417e-33	87%
Blast2go	response to red light	GO:0010114	Biological Process	5.66417e-33	87%
Blast2go	iron-sulfur cluster assembly	GO:0016226	Biological Process	5.66417e-33	87%
Blast2go	response to blue light	GO:0009637	Biological Process	5.66417e-33	87%
Blast2go	cytochrome complex assembly	GO:0017004	Biological Process	5.66417e-33	87%
Blast2go	protein binding	GO:0005515	Molecular Function	5.66417e-33	87%
Blast2go	ATPase activity, coupled to transmembrane movement of substances	GO:0042626	Molecular Function	5.66417e-33	87%
Blast2go	mitochondrial respiratory chain	GO:0005746	Cellular Component	5.66417e-33	87%
Blast2go	chloroplast	GO:0009507	Cellular Component	5.66417e-33	87%
Blast2go	regulation of response to red or far red light	GO:2000030	Biological Process	5.66417e-33	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	ABC-1	IPR004147	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7U2S2

Fln msg: Distance to subject end: 242 aas, your sequence is shorter than subject: 79 - 583

Fln protein: RRDLGCHSVHKAVTRDGMEVAMKIQYPGVAESIDSDIENVKRLLDYTNLLPNGLYLDQAMKVAKVELARECNYELEAAN

Protein Length: 80

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTCACAAAGCTGTTACAAGAGATGGTATGGAGGTTGCAATGAAGATTCAATATCCTGGTGTGGCAGAGAGTATAGATAGTGACATAGAAAATGTTAAACGGCTTCTTGATTACACCAACCTCTTGCCAAACGGGCTCTATCTTGACCAAGCTATGAAGGTGGCAAAAGTGGAGCTTGCTAGGGAATGCAATTATGAGCTGGAAGCAGCAAACC

Fln Alignment:

AllPineV4_c58229___VHKAVTRDGMEVAMKIQYPGVAESIDSDIENVKRLLDYTNLLPNGLYLDQAMKVAKVELARECNYELEAAN
D7U2S2_______________VHKAVTKDGLEVAMKIQYPGVADSIESDIENVKLLLDYTNLIPEGLYLDKAMKVAKEELSRECDYELEATN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain