SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene56674

Length: 295 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene56674
AGAGCATTGACAGCAGACATCATATCCCGTACTGCATTCGGTAGTAGTTACAATGAAGGCAGAGAAGTATTTAAATTGCAGAGAGAATTACAAGAAATGGCTGCCGAAGCCGAACGATCTGTCTTCATCCGTGGAAGCCAATATATTCCTACAAGCAGGAACAGGAAAGCATGGAAGATTGATAAGAGAATTAAAGGAACCCTGAATTCTATAATTCAAAGTAGGTTGCAACCCAGCACAACAGGAAGACCTCATGTTAGCTACGGTAATGACCTGCTTGGAGTCATGATGACTG

Ace file of the UniGene sp_v2.0_unigene56674 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os07g0635500 protein n=2 Tax=Oryza sativa RepID=Q8LIR5_ORYSJ	-	-	2.0e-19	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Blast2go	cytochrome p450	-	-	8.40779e-45	72%

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P0T0

Fln msg: Distance to subject end: 106 aas, your sequence is shorter than subject: 98 - 412

Fln protein: RALTADIISRTAFGSSYNEGREVFKLQRELQEMAAEAERSVFIRGSQYIPTSRNRKAWKIDKRIKGTLNSIIQSRLQPSTTGRPHVSYGNDLLGVMMT

Protein Length: 99

Fln nts: AGAGCATTGACAGCAGACATCATATCCCGTACTGCATTCGGTAGTAGTTACAATGAAGGCAGAGAAGTATTTAAATTGCAGAGAGAATTACAAGAAATGGCTGCCGAAGCCGAACGATCTGTCTTCATCCGTGGAAGCCAATATATTCCTACAAGCAGGAACAGGAAAGCATGGAAGATTGATAAGAGAATTAAAGGAACCCTGAATTCTATAATTCAAAGTAGGTTGCAACCCAGCACAACAGGAAGACCTCATGTTAGCTACGGTAATGACCTGCTTGGAGTCATGATGACTG

Fln Alignment:

AllPineV4_c56844___RALTADIISRTAFGSSYNEGREVFKLQRELQEMAAEAERSVFIRGSQYIPTSRNRKAWKIDKRIKGTLNSIIQSRLQPSTTGRPHVSYGNDLLGVMMT
A9P0T0_______________RELTANIISHTAFGSSYNEGKEVFELQRELQEMAAKAERSVFIPGSQYIPTRKNRYAWKIDRRIKEILNSIIQSRLEPRTTTRTHVGYGSDLLGIMMT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain