SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene56581

Length: 453 nt

UniGene Fasta

>sp_v2.0_unigene56581
ACACTTCACAAGTGCGGTCGATGGGAAGCCAGGATGGGACAATTTCTCGGGAAAAGTATATTTACTTGGGCTTATTTGACAATGAAATAGAAGCTGCAAGGGCCTATGACCAGGCAGCTATCAGGTGCAATGGAAGGGAGGCAGTCACCAATTTTGATCCTAGCGTATATCAGCATGATCTTCTTACAGAAGGCAACACTGCAAGTATTGATCAAAATCTGGATCTCAGCCTCGGCATTTCTGTACCAACTGTACCTGACACTACGGTTTCACGAGATAATAAGATAGGAGGGTCAAAGGTGAAAACTAGTACAAACATCGTTGTCGAACCCGACTGGAAGAAAGCTCGTTGTGCCATTTCTACGCCGGAAGATGCAAGTCAGCAGACTCAGTTGGAAGCACCGTTCTCATATGGGCAATTGGGCCCGTACACTGGATTGCATGATAGAGAAA

Ace file of the UniGene sp_v2.0_unigene56581

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	APETALA2-like protein 2 n=1 Tax=Pinus thunbergii RepID=Q76H94_PINTH	-	-	89%
FL-Next	tr=APETALA2-like protein 2; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana).	-	-	89%
Blast2go	ap2 domain-containing transcription factor	-	-	73%

Source	InterPros	Term	Type	Identity
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q76H94

Fln msg: Distance to subject end: 126 aas, your sequence is shorter than subject: 150 - 554

Fln protein: TSQVRSMGSQDGTISREKYIYLGLFDNEIEAARAYDQAAIRCNGREAVTNFDPSVYQHDLLTEGNTASIDQNLDLSLGISVPTVPDTTVSRDNKIGGSKVKTSTNIVVEPDWKKARCAISTPEDASQQTQLEAPFSYGQLGPYTGLHDRE

Protein Length: 151

Fln nts: ACACTTCACAAGTGCGGTCGATGGGAAGCCAGGATGGGACAATTTCTCGGGAAAAGTATATTTACTTGGGCTTATTTGACAATGAAATAGAAGCTGCAAGGGCCTATGACCAGGCAGCTATCAGGTGCAATGGAAGGGAGGCAGTCACCAATTTTGATCCTAGCGTATATCAGCATGATCTTCTTACAGAAGGCAACACTGCAAGTATTGATCAAAATCTGGATCTCAGCCTCGGCATTTCTGTACCAACTGTACCTGACACTACGGTTTCACGAGATAATAAGATAGGAGGGTCAAAGGTGAAAACTAGTACAAACATCGTTGTCGAACCCGACTGGAAGAAAGCTCGTTGTGCCATTTCTACGCCGGAAGATGCAAGTCAGCAGACTCAGTTGGAAGCACCGTTCTCATATGGGCAATTGGGCCCGTACACTGGATTGCATGATAGAGAAA

Fln Alignment:

AllPineV4_c56736___GTISREKYIYLGLFDNEIEAARAYDQAAIRCNGREAVTNFDPSVYQHDLLTEGNTASIDQNLDLSLGISVPTVPDTTVSRDNKIGGSKVKTSTNIVVEPDWKKARCAISTPEDASQQTQLEAPFSYGQLGPYTGLHDRE
Q76H94_______________GQFLGKKYIYLGLFDYEIEAARAYDQAAIRCNGREAVTNFDPSVYQNDLLTEG----IDQNLDLSLGISAPTLPDTTVSRDNKIGGSKVKTSTNIVVEPDWKKARCAISTPEDASQQTQLEAPFSYGQLGPYTGLQDRE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain