SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene56580

Length: 405 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene56580
ACCATGGGAAGAAGGACAGTATGGACCGTTTAATACCTTATTGATTGATGATAGCCCTTACAAAGCTTTGTGCAATCCTCCACATACTGCAGTGTTTCCCGATCCATATAATGTCGTGACTTGGCTGGATGATATTTTAGGAGGGCCTTTACAAAAATATTTGGAAGGACTTTTGACTGCTTCAAATGTACAGGAGTATGTGAAGGATCACCCGTTTGGACAACCAGCAATCACCAGAGAAAGCCAGAACTGGCATTTCTACCGTCAGGTTCTTCCCATGAGTACAATGCCTAGCAAAAACTTGCAAGACAATGGTCTACTTCATGATAACATGCAAGTTACCGGCATTGATCAACATTCTGTTCCTGGTATGGGAGTAGAGAAGAATAGTGTGGCAGATCCCAA

Ace file of the UniGene sp_v2.0_unigene56580

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein Sb01g007700; Sorghum bicolor (Sorghum) (Sorghum vulgare).	-	-	0.0	51%
Blast2go	protein	-	-	7.04899e-32	69%

Source	InterPros	Term	Type	e value	Identity
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	0.0	-
Sma3	NLI interacting factor	IPR004274	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: C5X086

Fln msg: STOP codon was not found. Distance to subject end: 33 aas,

Fln protein: PWEEGQYGPFNTLLIDDSPYKALCNPPHTAVFPDPYNVVTWLDDILGGPLQKYLEGLLTASNVQEYVKDHPFGQPAITRESQNWHFYRQVLPMSTMPSKNLQDNGLLHDNMQVTGIDQHSVPGMGVEKNSVADP

Protein Length: 135

Fln nts: ACCATGGGAAGAAGGACAGTATGGACCGTTTAATACCTTATTGATTGATGATAGCCCTTACAAAGCTTTGTGCAATCCTCCACATACTGCAGTGTTTCCCGATCCATATAATGTCGTGACTTGGCTGGATGATATTTTAGGAGGGCCTTTACAAAAATATTTGGAAGGACTTTTGACTGCTTCAAATGTACAGGAGTATGTGAAGGATCACCCGTTTGGACAACCAGCAATCACCAGAGAAAGCCAGAACTGGCATTTCTACCGTCAGGTTCTTCCCATGAGTACAATGCCTAGCAAAAACTTGCAAGACAATGGTCTACTTCATGATAACATGCAAGTTACCGGCATTGATCAACATTCTGTTCCTGGTATGGGAGTAGAGAAGAATAGTGTGGCAGATCCCAA

Fln Alignment:

AllPineV4_c56735___PWEEGQYGPFNTLLIDDSPYKALCNPPHTAVFPDPYNVVTWLDDIL--GGPLQKYLEGLLTASNVQEYVKDHPFGQPAITRESQNWHFYRQVLPMSTMP
C5X086_______________PWEEGDYSPSNTLLVDDSPYKALRNPPYTAIFPRSYSYLNWNDNSLGPGGDLRVYLQNLAAADDVERFVRNNPFGQPFITKSDPHWNFYAQIADRECAP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain