SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene56244

Length: 476 nt

Origin of reads: Biogeco2 v2

UniGene Fasta

>sp_v2.0_unigene56244
ATGGGCTTGCACCTGCAACAATGCTCAAAGAATTGTCATCATACTTCCAAAGATTTTCGAGCCATAGTCGGCTAGTTTCTCTTCCAGCACCACATGAAATTGGTCAGCGTGAAGCTTTAGAGTATGGGGACATTACTCCATTCTCAATCACATTGGGGTTATCCGTTCAGAACATGATGATTTTGCATTGCGTTTCTCTGCGGCAATGAACCAGCTTCTGGTTTCAAAGTCTGAACCAATCATTGATGCCGAGTGGAGCAAGGAAGTAAAGGGCAGTATGTATGATATTGTCGTTGAAGGGTTTCGACTTCTCAGCAGGTGGATTGGTCGTGTTTGGGACAATGTGCATGGAAATTCTCCATGCCTTGTAAGGATGCTGTTCCTCTTGATCCAGATGATCTCTCCGCAACTATCTCAGATTATGAGAAGGTTGTTCGGTGCAATTATTCCCATGAAGAGAGAAGAGCAATGGTTGA

Ace file of the UniGene sp_v2.0_unigene56244

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein PIR [Arabidopsis thaliana] sp\|Q5S2C3.1\|PIR_ARATH RecName: Full=Protein PIR; AltName: Full=PIR of plants; AltName: Full=Protein KLUNKER; Short=AtSRA1; AltName: Full=Protein PIROGI gb\|AAV64873.1\| PIR [Arabidopsis thaliana] gb\|AED92556.1\| protein PIR	-	-	9.94922e-44	61%
FL-Next	Isoform 2 of Protein PIR OS=Arabidopsis thaliana GN=PIR	-	-	0.0	70%
Blast2go	protein pir	-	-	9.80909e-45	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	trichome morphogenesis	GO:0010090	Biological Process	9.80909e-45	81%
Blast2go	actin cytoskeleton organization	GO:0030036	Biological Process	9.80909e-45	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	Cytoplasmic FMR1-interacting	IPR008081	-	0.0	-
Sma3	Cytoplasmic FMR1-interacting, subgroup	IPR016536	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q5S2C3-2

Fln msg: ERROR#3, very serious frame error, Separated hits, possible frame ERROR between 125 and 131, and overlapping frame ERROR between 340 and 340, Distance to subject end: 820 aas, your sequence is shorter than subject: 158 - 1283

Fln protein: GLAPATMLKELSSYFQRFSSHSRLVSLPAPHEIGQREALExxxHYSILNHIGVIRSEHDDFALRFSAAMNQLLVSKSEPIIDAEWSKEVKGSMYDIVVEGFRLLSRWIGRVxxxCAWKFSMPCKDAVPLDPDDLSATISDYEKVVRCNYSHEERRAMV

Protein Length: 159

Fln nts: ATGGGCTTGCACCTGCAACAATGCTCAAAGAATTGTCATCATACTTCCAAAGATTTTCGAGCCATAGTCGGCTAGTTTCTCTTCCAGCACCACATGAAATTGGTCAGCGTGAAGCTTTAGAGTAxxxxxxACATTACTCCATTCTCAATCACATTGGGGTTATCCGTTCAGAACATGATGATTTTGCATTGCGTTTCTCTGCGGCAATGAACCAGCTTCTGGTTTCAAAGTCTGAACCAATCATTGATGCCGAGTGGAGCAAGGAAGTAAAGGGCAGTATGTATGATATTGTCGTTGAAGGGTTTCGACTTCTCAGCAGGTGGATTGGTCGTGTTTGxxxxxxATGTGCATGGAAATTCTCCATGCCTTGTAAGGATGCTGTTCCTCTTGATCCAGATGATCTCTCCGCAACTATCTCAGATTATGAGAAGGTTGTTCGGTGCAATTATTCCCATGAAGAGAGAAGAGCAATGGTTGA

Fln Alignment:

AllPineV4_c56347___LAPATMLKELSSYFQRFSSHSRLVSLPAPHEIGQREALEYxxHYSILNHIGVIRSEHDDFALRFSAAMNQLLVSKSEPIIDAEWSKEVKGSMYDIVVEGFRLLSRWIGRVWDQCAWKFSMPCKDAVPLDPDDLSATISDYEKVVRCNYSHEERRAMV
Q5S2C3-2_____________LSPAAILKELSVYFQKFSSQTRLLTLPAPHELPPREALEYxxHYLIVNHIGALRAEHDDFTIRFASSMNQLLLLKSNDGAYTEWCREVKGNMYDMVVEGFQLLSRWTARIWEQCAWKFSRPCRDAG--ETPEASGSYSDYEKVVRFNYTAEERKALV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain