SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene55903

Length: 312 nt

UniGene Fasta

>sp_v2.0_unigene55903
TTCATCCATTGTTCTGGCCACACAGCATATGCCTTCCACACAATTTGAAAATTATGACATTGATCCAGAGGCCAGCTCCATGGGCAGCAGACTTGTATCTCGAGATCCAGATCTTTCGCAACGAATGAGTTTCCATACTTCTGATATCAATCATGTGGGAGGGGAGAAGATTGGGGAATATGACATCATTGTTCTTGCTGCCCTGGTTGGGTTGGAAAGGACACAGAAGCTGAAGATCATAGATCACCTTGCAACAAACATGAGACCTGGTGCTGCACTGCTGCTAAGAAGTGCCCATGGTGCCAGAAGCTT

Ace file of the UniGene sp_v2.0_unigene55903

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	nicotianamine synthase [Nicotiana tabacum]	-	-	2.0e-26	56%
FL-Next	sp=Nicotianamine synthase; Solanum lycopersicum (Tomato) (Lycopersicon esculentum).	-	-	0.0	54%
Blast2go	nicotianamine synthase	-	-	3.15895e-34	76%

Source	ECs	Term	Type	e value	Identity
Blast2go	Nicotianamine synthase.	EC:2.5.1.43	-	3.15895e-34	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	nicotianamine biosynthetic process	GO:0030418	Biological Process	3.15895e-34	76%
Blast2go	cellular response to ethylene stimulus	GO:0071369	Biological Process	3.15895e-34	76%
Blast2go	cellular response to iron ion	GO:0071281	Biological Process	3.15895e-34	76%
Blast2go	cellular response to nitric oxide	GO:0071732	Biological Process	3.15895e-34	76%
Blast2go	nicotianamine synthase activity	GO:0030410	Molecular Function	3.15895e-34	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nicotianamine synthase	IPR004298	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9XGI7

Fln msg: Distance to subject end: 79 aas, your sequence is shorter than subject: 103 - 317

Fln protein: SSIVLATQHMPSTQFENYDIDPEASSMGSRLVSRDPDLSQRMSFHTSDINHVGGEKIGEYDIIVLAALVGLERTQKLKIIDHLATNMRPGAALLLRSAHGARS

Protein Length: 104

Fln nts: TTCATCCATTGTTCTGGCCACACAGCATATGCCTTCCACACAATTTGAAAATTATGACATTGATCCAGAGGCCAGCTCCATGGGCAGCAGACTTGTATCTCGAGATCCAGATCTTTCGCAACGAATGAGTTTCCATACTTCTGATATCAATCATGTGGGAGGGGAGAAGATTGGGGAATATGACATCATTGTTCTTGCTGCCCTGGTTGGGTTGGAAAGGACACAGAAGCTGAAGATCATAGATCACCTTGCAACAAACATGAGACCTGGTGCTGCACTGCTGCTAAGAAGTGCCCATGGTGCCAGAAGCTT

Fln Alignment:

AllPineV4_c55942___SSIVLATQHMPSTQFENYDIDPEASSMGSRLVSRDPDLSQRMSFHTSDINHVGGEKIGEYDIIVLAALVGLERTQKLKIIDHLATNMRPGAALLLRSAHGARS
Q9XGI7_______________TSLVLATKHLKTTCFHNYDIDVDANFMASALVAADPDMSSRMTFHTADVMDVTC-ALKDYDVVFLAALVGMDKEDKVKVVDHLAKYMSPGATLMLRSAHGARA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain