SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene55523

Length: 333 nt

UniGene Fasta

>sp_v2.0_unigene55523
ATGGGGAAATTTCAACATTTTCTGGGACACCGGAAACCTAAGCCCCGAAGCAGTTGAGGCCATAAAAGCCCAACATCCAAACGTTAAGGTTGCCCTCAGCGTCGGAGGGGATAGCGTAAACAACCAGCCCGCGGAGTTCAAGCTATCGTCGGTGTCCGCCTGGGTAGACAACGCAGTCTCCTCACTGTCAAAAATAATCGAAGAATACCATCTCGATGGCATCGACATCGACTATGAGCATTTCAAGCCGACAATGATACATTTGCGGAGTGCATCGGGCAAATGATAGCGAGGTTAAAGCAGAGCAACGTCATCTCCTTCGCCTCCATCGCT

Ace file of the UniGene sp_v2.0_unigene55523

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Chitinase 1; AltName: Full=Tulip bulb chitinase-1; Short=TBC-1; Flags: Precursor dbj\|BAA88408.1\| bulb chitinase-1 [Tulipa bakeri]	-	-	1.0e-32	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	chitinase 2-like	-	-	0.0	80%

Source	InterPros	Term	Type	Identity
Sma3		IPR000173	-	-
Sma3	2S globulin	IPR000677	-	-
Sma3	Glycoside hydrolase, family 18, catalytic domain	IPR001223	-	-
Sma3	Glycoside hydrolase, chitinase active site	IPR001579	-	-
Sma3	Peptidoglycan-binding Lysin subgroup	IPR002482	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Peptidoglycan-binding lysin domain	IPR018392	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NT96

Fln msg: Overlapping hits, possible frame ERROR between 247 and 241, Distance to subject end: 117 aas, your sequence is shorter than subject: 111 - 280

Fln protein: WGNFNIFWDTGNLSPEAVEAIKAQHPNVKVALSVGGDSVNNQPAEFKLSSVSAWVDNAVSSLSKIIEEYHLDGIDIDYExxxxDNDTFAECIGQMIARLKQSNVISFASIA

Protein Length: 112

Fln nts: ATGGGGAAATTTCAACATTTTCTGGGACACCGGAAACCTAAGCCCCGAAGCAGTTGAGGCCATAAAAGCCCAACATCCAAACGTTAAGGTTGCCCTCAGCGTCGGAGGGGATAGCGTAAACAACCAGCCCGCGGAGTTCAAGCTATCGTCGGTGTCCGCCTGGGTAGACAACGCAGTCTCCTCACTGTCAAAAATAATCGAAGAATACCATCTCGATGGCATCGACATCGACTATGAGxxxxxxxxxxxxGACAATGATACATTTGCGGAGTGCATCGGGCAAATGATAGCGAGGTTAAAGCAGAGCAACGTCATCTCCTTCGCCTCCATCGCT

Fln Alignment:

AllPineV4_c55498___GNFNIFWDTGNLSPEAVEAIKAQHPNVKVALSVGGDSVNNQPAEFKLSSVSAWVDNAVSSLSKIIEEYHLDGIDIDYEHxxADNDTFAECIGQMIARLKQSNVISFASIA
A9NT96_______________GNFNIFWDTGNLSPEAVQAIKAQHTNVKVALSLGGDSVDSQPAEFKPSSVSSWVDNAVSSLSKIIEEYHLDGIDIDYEHxxANNDTFAECIGQLITRLKQSNAISFASIA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain