SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene55148

Length: 352 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene55148
GAACTAGAAGACAGCGAACATCAAAACATCGAAGAATACACCAATACCGGCAGCTGGGCAGACTCCCAAACATATGCCAACCTCCTTAATAAATGCATCTCTACGAAGCGTTTAACAGAAGGCAAGAGCATTCAAGCCCACCTACTCAAAAATGGATTTCAAGCTCACCTCTTTTTGCACACAAGCCTTGTAAATATGTATTCTAAGTGTGGCAATCTGTTGGATTCACGCCAAGTGTTTGACGAAATGTCCGAGAGAAATGTCGTCTCGTGGAATGCAATGATTTCAGGATATACTCAGCACGGGCAGTGGAGAAAGGCGTTGGATTTGTTTAGCGAAATGCAGGGACATT

Ace file of the UniGene sp_v2.0_unigene55148 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9LR69.1\|PPR8_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g03540 gb\|AAF86514.1\|AC002560_7 F21B7.16 [Arabidopsis thaliana] gb\|ABE65596.1\| pentatricopeptide repeat-	-	-	2.0e-18	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	36%
Blast2go	pentatricopeptide repeat-containing protein mitochondrial-like	-	-	1.11652e-24	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKN6

Fln msg: Distance to subject end: 86 aas, your sequence is shorter than subject: 117 - 394

Fln protein: ELEDSEHQNIEEYTNTGSWADSQTYANLLNKCISTKRLTEGKSIQAHLLKNGFQAHLFLHTSLVNMYSKCGNLLDSRQVFDEMSERNVVSWNAMISGYTQHGQWRKALDLFSEMQGH

Protein Length: 118

Fln nts: GAACTAGAAGACAGCGAACATCAAAACATCGAAGAATACACCAATACCGGCAGCTGGGCAGACTCCCAAACATATGCCAACCTCCTTAATAAATGCATCTCTACGAAGCGTTTAACAGAAGGCAAGAGCATTCAAGCCCACCTACTCAAAAATGGATTTCAAGCTCACCTCTTTTTGCACACAAGCCTTGTAAATATGTATTCTAAGTGTGGCAATCTGTTGGATTCACGCCAAGTGTTTGACGAAATGTCCGAGAGAAATGTCGTCTCGTGGAATGCAATGATTTCAGGATATACTCAGCACGGGCAGTGGAGAAAGGCGTTGGATTTGTTTAGCGAAATGCAGGGACATT

Fln Alignment:

AllPineV4_c55035___ADSQTYANLLNKCISTKRLTEGKSIQAHLLKNGFQAHLFLHTSLVNMYSKCGNLLDSRQVFDEMSERNVVSWNAMISGYTQHGQWRKALDLFSEMQ
B8LKN6_______________ANYVTVASVLPACAQLSDLQQGKEIHGYIIRRGLDLGIVVGNALIDMYAKCGSIGSAQKVFDKMLQRDVVSWNVAIAGYAQNGRFDECMELFRKMQ

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain