SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene55093

Length: 151 nt

UniGene Fasta

>sp_v2.0_unigene55093
GGAGGTTGTTCCTCCTCCCTCTGATAGCCATGTGCCTCTCATGCGGCCAGTTATAAGATGGAATGAGCGGGATACCATATTGACACGCATCAATCCAAAGATTCGAGATACCAGTGTCCTTGTTAGGCTGCGCCCTGCTTGGGAAGATTTG

Ace file of the UniGene sp_v2.0_unigene55093

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Double-stranded RNA-binding domain (DsRBD)-containing protein-like n=2 Tax=Oryza sativa RepID=Q6H5U8_ORYSJ	-	-	6.0e-14	76%
FL-Next	sp=RNA polymerase II C-terminal domain phosphatase-like 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	68%
Blast2go	rna polymerase ii c-terminal domain phosphatase-like 1-like	-	-	3.29699e-17	85%

Source	InterPros	Term	Type	Identity
Sma3	Double-stranded RNA-binding	IPR001159	-	-
Sma3	NLI interacting factor	IPR004274	-	-
Sma3	Double-stranded RNA-binding-like	IPR014720	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q5YDB6

Fln msg: Distance to subject end: 685 aas, your sequence is shorter than subject: 50 - 967

Fln protein: EVVPPPSDSHVPLMRPVIRWNERDTILTRINPKIRDTSVLVRLRPAWEDL

Protein Length: 51

Fln nts: GGAGGTTGTTCCTCCTCCCTCTGATAGCCATGTGCCTCTCATGCGGCCAGTTATAAGATGGAATGAGCGGGATACCATATTGACACGCATCAATCCAAAGATTCGAGATACCAGTGTCCTTGTTAGGCTGCGCCCTGCTTGGGAAGATTTG

Fln Alignment:

AllPineV4_c54969___EVVPPPSDSHVPLMRPVIRWNERDTILTRINPKIRDTSVLVRLRPAWEDL
Q5YDB6_______________EIVPALSDNHQPLVRPLIRLQEKNIILTRINPMIRDTSVLVRMRPSWEEL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain