SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene55050

Length: 336 nt

UniGene Fasta

>sp_v2.0_unigene55050
AATGTCAGAAAGTGGATGACTTGGATCGATGCAATGAAAAAGTGGGAAAAGCTGCCATCAGAAAACATGTCAACAGGAATCACTCTGAGATTGCTAAAGAGACAAGTGTTAGAAGGATGGGTGCTAAAGAAAATATTTATTTTCCCTTTATAGAAGGCTATGCATTTGTGGCAACCATATGGGTGGGCATGGAAGGTTTCCATATGACAGTTAATGGGAAACATGTCACTTCATTTGAATACCGTGAGGTACATGCCCAGTGAGAGTCTTGAACCATGGTTAGTGAGTGGGGTAAGATTTACGGGAGATCTTAAGCTCCTTTCTGTATTAGCAAGT

Ace file of the UniGene sp_v2.0_unigene55050

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00337, Gal-bind_lectin, Galactoside-binding lectin	-	-	2.0e-08	44%
FL-Next	sp=Beta-1,3-galactosyltransferase 15; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	45%
Blast2go	beta- -galactosyltransferase 15-like	-	-	1.25011e-20	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	Lewis a epitope biosynthetic process	GO:0010493	Biological Process	1.25011e-20	63%
Blast2go	UDP-galactose:N-glycan beta-1,3-galactosyltransferase activity	GO:0010488	Molecular Function	1.25011e-20	63%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	1.25011e-20	63%

Source	InterPros	Term	Type	Identity
Sma3	Galectin, carbohydrate recognition domain	IPR001079	-	-
Sma3	Glycosyl transferase, family 31	IPR002659	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8L7F9

Fln msg: Separated hits, possible frame ERROR between 248 and 262, Distance to subject end: 279 aas, your sequence is shorter than subject: 112 - 643

Fln protein: CQKVDDLDRCNEKVGKAAIRKHVNRNHSEIAKETSVRRMGAKENIYFPFIEGYAFVATIWVGMEGFHMTVNGKHVTSFEYRxxxxxxESLEPWLVSGVRFTGDLKLLSVLAS

Protein Length: 113

Fln nts: AATGTCAGAAAGTGGATGACTTGGATCGATGCAATGAAAAAGTGGGAAAAGCTGCCATCAGAAAACATGTCAACAGGAATCACTCTGAGATTGCTAAAGAGACAAGTGTTAGAAGGATGGGTGCTAAAGAAAATATTTATTTTCCCTTTATAGAAGGCTATGCATTTGTGGCAACCATATGGGTGGGCATGGAAGGTTTCCATATGACAGTTAATGGGAAACATGTCACTTCATTTGAATACCGTGAxxxxxxxxxxxxxxxTGAGAGTCTTGAACCATGGTTAGTGAGTGGGGTAAGATTTACGGGAGATCTTAAGCTCCTTTCTGTATTAGCAAGT

Fln Alignment:

AllPineV4_c54918___QKVDDLDRCNEKVGKAAIRKHVNRNHSEIAKETSVRRMGAKENIYFPFIEGYAFVATIWVGMEGFHMTVNGKHVTSFEYRExxxxxESLEPWLVSGVRFTGDLKLLSVLAS
Q8L7F9_______________KKVDDLDECNKMVGGEINRTSSTSLQSNTSRGVPVAREASKHEKYFPFKQGFLSVATLRVGTEGMQMTVDGKHITSFAFRDxxxxxDTLEPWLVSEIRITGDFRLISILAS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain