SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene55037

Length: 375 nt

UniGene Fasta

>sp_v2.0_unigene55037
AATCACATCAGACTATTAGATCTGGTGACCAAGCCTCTGATACCGAAGTATCTATTGAGAAGAATTCTGGTCATGTTCTTGTGATTGGGGCTACAAATAGACCTGACTCTCTAGATCCTGCACTTCGGAGGCCTGGCCGCTTTGATCGTGAAATTTTTCTAGGTGTTCCAGATGAAAATGCAAGGGCAGAGATCTTGTCAGTACTTGCAAGTGGATTAAGATTAGAAGGCTCATTTGATTATAAAAAGGTTGCGAAATGCACACCTGGTTTTGTAGGTGCAGATTTGGCAGCATTAACTAGGGAAGCAGCTTCAGTTGCAATAAAGAGATTGATGGAAGCAGGAATTCTCAGAATCCTGCCGAATGTGAACACAT

Ace file of the UniGene sp_v2.0_unigene55037

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative cell division control protein [Arabidopsis thaliana]	-	-	3.0e-26	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Blast2go	protein	-	-	1.34365e-40	78%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Ribosomal protein S16	IPR000307	-	-
Sma3	Peptidase M41	IPR000642	-	-
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Caspase Recruitment	IPR001315	-	-
Sma3		IPR001984	-	-
Sma3	CDC48, N-terminal subdomain	IPR003338	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	CDC48, domain 2	IPR004201	-	-
Sma3	Peptidase, FtsH	IPR005936	-	-
Sma3	26S proteasome subunit P45	IPR005937	-	-
Sma3	ATPase, AAA-type, CDC48	IPR005938	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	Aspartate decarboxylase-like fold	IPR009010	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Peptidase M41, FtsH extracellular	IPR011546	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Vps4 oligomerisation, C-terminal	IPR015415	-	-
Sma3		IPR017909	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWQ8

Fln msg: Distance to subject end: 21 aas, your sequence is shorter than subject: 124 - 398

Fln protein: SHQTIRSGDQASDTEVSIEKNSGHVLVIGATNRPDSLDPALRRPGRFDREIFLGVPDENARAEILSVLASGLRLEGSFDYKKVAKCTPGFVGADLAALTREAASVAIKRLMEAGILRILPNVNT

Protein Length: 125

Fln nts: AATCACATCAGACTATTAGATCTGGTGACCAAGCCTCTGATACCGAAGTATCTATTGAGAAGAATTCTGGTCATGTTCTTGTGATTGGGGCTACAAATAGACCTGACTCTCTAGATCCTGCACTTCGGAGGCCTGGCCGCTTTGATCGTGAAATTTTTCTAGGTGTTCCAGATGAAAATGCAAGGGCAGAGATCTTGTCAGTACTTGCAAGTGGATTAAGATTAGAAGGCTCATTTGATTATAAAAAGGTTGCGAAATGCACACCTGGTTTTGTAGGTGCAGATTTGGCAGCATTAACTAGGGAAGCAGCTTCAGTTGCAATAAAGAGATTGATGGAAGCAGGAATTCTCAGAATCCTGCCGAATGTGAACACAT

Fln Alignment:

AllPineV4_c54905___GHVLVIGATNRPDSLDPALRRPGRFDREIFLGVPDENARAEILSVLASGLRLEGSFDYKKVAKCTPGFVGADLAALTREAASVAIK
A9NWQ8_______________GKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQARMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain