SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene55032

Length: 456 nt

UniGene Fasta

>sp_v2.0_unigene55032
CGTCGTGACCTTGGCTGTCACTCATTGTTGCAGGAATGCAGGGACATGAAATCCTTGGCAATGGGTAGGAAAGTCCATGCCCACATGATAAAAACTGGAGTTAAACCTGAGAGTTATGTTGGCAATCGATTGCTAGATATGTACTTCAAGTGTGGGAGCGTTGTAGATGCACGCAAGGTGTTTGAAAAAATGCAAGCGAGAGATGTTGTTGCCTGGACTACTATGATCGCTGGATATTTCAGATGTGCGAGTGTAGAGTTTGCACGCCAAATATTTGACGAAATGCCTCAACGAGATGTGGTTTCTTGGAATGCAATGATTTCAGGGTATGCTCATCACGGCCAGGGGTTTGAGGTGTTACAACTTTTTCGGCAAATGCAACGGATGGGTTTCAAGCCAGACCTTTATACATTTACCAGCGTTTTGATGGGATGTGCAGGCCTGGCAAATCACTTA

Ace file of the UniGene sp_v2.0_unigene55032

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9SKQ4.1\|PP167_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g21090 gb\|AAD29807.1\| unknown protein [Arabidopsis thaliana] gb\|AEC07122.1\| pentatricopeptide repeat-co	-	-	2.0e-29	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	37%
Blast2go	pentatricopeptide repeat-containing protein	-	-	6.11145e-35	63%

Source	InterPros	Term	Type	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Uncharacterised protein family UPF0497, trans-membrane plant	IPR006702	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKN6

Fln msg: Distance to subject end: 264 aas, atg_distance in limit (1-15): atg_distance = 5, W2: There is no M at the beginning, your sequence is shorter than subject: 152 - 394

Fln protein: RRDLGCHSLLQECRDMKSLAMGRKVHAHMIKTGVKPESYVGNRLLDMYFKCGSVVDARKVFEKMQARDVVAWTTMIAGYFRCASVEFARQIFDEMPQRDVVSWNAMISGYAHHGQGFEVLQLFRQMQRMGFKPDLYTFTSVLMGCAGLANHL

Protein Length: 153

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGTTGCAGGAATGCAGGGACATGAAATCCTTGGCAATGGGTAGGAAAGTCCATGCCCACATGATAAAAACTGGAGTTAAACCTGAGAGTTATGTTGGCAATCGATTGCTAGATATGTACTTCAAGTGTGGGAGCGTTGTAGATGCACGCAAGGTGTTTGAAAAAATGCAAGCGAGAGATGTTGTTGCCTGGACTACTATGATCGCTGGATATTTCAGATGTGCGAGTGTAGAGTTTGCACGCCAAATATTTGACGAAATGCCTCAACGAGATGTGGTTTCTTGGAATGCAATGATTTCAGGGTATGCTCATCACGGCCAGGGGTTTGAGGTGTTACAACTTTTTCGGCAAATGCAACGGATGGGTTTCAAGCCAGACCTTTATACATTTACCAGCGTTTTGATGGGATGTGCAGGCCTGGCAAATCACTTA

Fln Alignment:

AllPineV4_c54900___LGCHS----LLQECRDMKSLAMGRKVHAHMIKTGVKPESYVGNRLLDMYFKCGSVVDARKVFEKMQARDVVAWTTMIAGYFRCASVEFARQIFDEMPQRDVVSWNAMISGYAHHGQGFEVLQLFRQMQRM-GFKPDLYTFTSVLMGCAGLAN
B8LKN6_______________LHCHPRSSLLLHLCTKAKTLAEAKQVHAHMLLTGILRIPSVETKLLNLYVKCGSLPD-------------------------------ARLAFDNMTKGDVFPWNVMIGGYVKHGETREALELYHQMQKVSSTNPDNYTYSSVLNACARLAS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain