SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene54504

Length: 559 nt

Origin of reads: Biogeco3 v1

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene54504
AATGTACCATACCCTGCAATCCTTGAAGCTTGAAAGAAATCCAATGGGAGGAGAAGGAATGGATCATTTGCTTTGCCCTCTAAGTAGGTTCAAACCAGGCCAGCCTCAAGCAAATACTTCTCTGAAATTTTTGTCCATTGGCGGACCTCAGAATAAAATGGGTAGTTCTGGTGTAAGTGCATTGGTGCAGATGATCTCCACAAACCAGAGTTTGCTCAAATTCGCTATAAATGATGACCGTAGCATGGGTGCAGCTGATCTCATCAAAATTCTTGTAGCTCTACAAAGAAATGCAGCTTTGAAGTCCCTGTCTTTGAAGGGATGTAAAGGAGTTGCTGGAGATGCAGTACTTGAAGCAATTATGGATACATTGCAGGTGAATCCCTGGCTTGAAGAGATTGATCTGAATGGAACTCCGCTTCAAGCCTCCGGTAAAACTGATCTTGTTCACCAACGGCTTGGACAAAATGCCAATGCCGAACCACAGATTGATTTTTCTCGAAGACATGCCTGTGACAGTGCCCAAATCTGCTAGAGTTTTCCTCTGTGGACAAGAATT

Ace file of the UniGene sp_v2.0_unigene54504 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein tornado 1 [Arabidopsis thaliana] dbj\|BAB08571.1\| unnamed protein product [Arabidopsis thaliana] gb\|AED96644.1\| protein tornado 1 [Arabidopsis thaliana]	-	-	6.00036e-42	50%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	54%
Blast2go	nucleotide-binding oligomerization domain-containing protein	-	-	0.0	68%

Source	GOs	Term	Type	Identity
Blast2go	multidimensional cell growth	GO:0009825	Biological Process	68%
Blast2go	meristem structural organization	GO:0009933	Biological Process	68%
Blast2go	auxin polar transport	GO:0009926	Biological Process	68%
Blast2go	leaf morphogenesis	GO:0009965	Biological Process	68%
Blast2go	leaf vascular tissue pattern formation	GO:0010305	Biological Process	68%
Blast2go	nuclear import	GO:0051170	Biological Process	68%
Blast2go	radial pattern formation	GO:0009956	Biological Process	68%
Blast2go	protein transporter activity	GO:0008565	Molecular Function	68%
Blast2go	cytoplasm	GO:0005737	Cellular Component	68%
Blast2go	nucleus	GO:0005634	Cellular Component	68%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5C204

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 900 aas, your sequence is shorter than subject: 178 - 1400

Fln protein: MYHTLQSLKLERNPMGGEGMDHLLCPLSRFKPGQPQANTSLKFLSIGGPQNKMGSSGVSALVQMISTNQSLLKFAINDDRSMGAADLIKILVALQRNAALKSLSLKGCKGVAGDAVLEAIMDTLQVNPWLEEIDLNGTPLQASGKTDLVHQRLGQNANAEPQIDFSRRHACDSAQIC*

Protein Length: 179

Fln nts: AATGTACCATACCCTGCAATCCTTGAAGCTTGAAAGAAATCCAATGGGAGGAGAAGGAATGGATCATTTGCTTTGCCCTCTAAGTAGGTTCAAACCAGGCCAGCCTCAAGCAAATACTTCTCTGAAATTTTTGTCCATTGGCGGACCTCAGAATAAAATGGGTAGTTCTGGTGTAAGTGCATTGGTGCAGATGATCTCCACAAACCAGAGTTTGCTCAAATTCGCTATAAATGATGACCGTAGCATGGGTGCAGCTGATCTCATCAAAATTCTTGTAGCTCTACAAAGAAATGCAGCTTTGAAGTCCCTGTCTTTGAAGGGATGTAAAGGAGTTGCTGGAGATGCAGTACTTGAAGCAATTATGGATACATTGCAGGTGAATCCCTGGCTTGAAGAGATTGATCTGAATGGAACTCCGCTTCAAGCCTCCGGTAAAACTGATCTTGTTCACCAACGGCTTGGACAAAATGCCAATGCCGAACCACAGATTGATTTTTCTCGAAGACATGCCTGTGACAGTGCCCAAATCTGCTAGAGTTTTCCTCTGTGGACAAGAATT

Fln Alignment:

AllPineV4_c54279___TLQSLKLERNPMGGEGMDHLLCPLSRFKPGQPQANTSLKFLSIGGPQNKMGSSGVSALVQMISTNQSLLKFAINDDRSMGAADLIKILVALQRNAALKSLSLKGCKGVAGDAVLEAIMDTLQVNPWLEEIDLNGTPLQASGKTDLVHQRLGQNANAEPQID
A5C204_______________SLESLYLDGNWFTGIGVEHLLCPLSRFSALQYQANVTLKSVTFGGGRTKIGRDGLAAILQMLTTNQSVTRLGIQDDESLRQEDIVKIFRSLERNATLRHLSLQGCKGVGGELVLQTIMETLQVNPWIEDIDLTRTPLQNSGQTDGIYQKLGQNGRTEPEID

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain