SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene54315

Length: 383 nt

UniGene Fasta

>sp_v2.0_unigene54315
AATGTATTTTCTTAAAACCAAGGACGAGGTTTTATGTCGATTCAAAGAGTTCAAGGCTCTGGTGGAGGATCTGGAAGGGAATAAAATAACATTTTTGCACTCAAATAATGGTGGAGAATATGTCGATAAGGACTCCACCGATTTTTGCACTCAGATAATGGTGGAGAGTATGTTGATAAGGACTTCACTGATTTTTGCGTTAAGGAGGGCATCATAAGAGAGTGGACAACTTCGTACAATCCAGAGCAGAATGGAGTAGCAGAAAGAAATAATAGGACTATTGTAGAAGCAGCTAGGGCCATGATGTATGATCAGGATATGTCGAAATTCCTGTGGGTGGAAGCATGCAACACAATAGTCTATGTTCAGAATAGGACTCCTCA

Ace file of the UniGene sp_v2.0_unigene54315

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gag-Pol polyprotein n=4 Tax=Medicago truncatula RepID=B8YLY3_MEDTR	-	-	2.0e-18	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Blast2go	gag-pol polyprotein	-	-	3.37969e-22	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular process	GO:0009987	Biological Process	3.37969e-22	69%
Blast2go	metabolic process	GO:0008152	Biological Process	3.37969e-22	69%
Blast2go	binding	GO:0005488	Molecular Function	3.37969e-22	69%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Enolase	IPR000941	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Dihydrofolate reductase domain	IPR001796	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Dihydrofolate reductase	IPR012259	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: Overlapping hits, possible frame ERROR between 148 and 139, Distance to subject end: 128 aas, your sequence is shorter than subject: 127 - 407

Fln protein: MYFLKTKDEVLCRFKEFKALVEDLEGNKITFLHSNNGGEYVDKDSxxxxxSDNGGEYVDKDFTDFCVKEGIIREWTTSYNPEQNGVAERNNRTIVEAARAMMYDQDMSKFLWVEACNTIVYVQNRTP

Protein Length: 128

Fln nts: AATGTATTTTCTTAAAACCAAGGACGAGGTTTTATGTCGATTCAAAGAGTTCAAGGCTCTGGTGGAGGATCTGGAAGGGAATAAAATAACATTTTTGCACTCAAATAATGGTGGAGAATATGTCGATAAGGACTCCxxxxxxxxxxxxxxxTCAGATAATGGTGGAGAGTATGTTGATAAGGACTTCACTGATTTTTGCGTTAAGGAGGGCATCATAAGAGAGTGGACAACTTCGTACAATCCAGAGCAGAATGGAGTAGCAGAAAGAAATAATAGGACTATTGTAGAAGCAGCTAGGGCCATGATGTATGATCAGGATATGTCGAAATTCCTGTGGGTGGAAGCATGCAACACAATAGTCTATGTTCAGAATAGGACTCCTCA

Fln Alignment:

AllPineV4_c54060___MYFLKTKDEVLCRFKEFKALVEDLEGNKIxxxxxxxxxxxxxxxxxxxxVKEGIIREWTTSYNPEQNGVAERNNRTIVEAARAMMYDQDMSKFLWVEACNTIVYVQNRTP
B8LKX7_______________VYFLKNKDEVFEKFKEFKAFVEKQSGKSIxxxxxxxxxxxxxxxxxxxxKYNGIKREHTVPYTPQQNGVAERKNRTLMEMARCMLHARNMDPKFWAEAINTATYIVNRTP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain