SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene53357

Length: 431 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene53357
GAGAGACTACCTTTTCATTATTACGCACTTTAGATCTCTCTGGTAATAATTTCTCAGGAAGAATTCCACCAGAGATTGGCCAACTAAAAGCCCTTGGAATACTCCACCTTAGCTATAATATGCTATGGGGTCATATTCCAAGATCACTGTCTAATTGTACGCGCCTTCAGTGGCTACGACTTTCAGTAAACAGCTTGACAGGGACTATTCCAATAGAATTCGGCCGTCTGGGCATGTTGGAACATCTCCGCTTGGCAGAAAATAATTTGTCTGGAAGTATTCCAATTTCTCTGAGCAACAGCACGTTTCTCCAAGATTTGTCCATTGGATACAACAATCTCACTGGACCGATTCCTTCATTTTTGGGTCTGCTCAGAAATCTCTCTTATCTTTACTTTGAAGGAAACTCACTAAGTGGTCATATCCCTTCC

Ace file of the UniGene sp_v2.0_unigene53357

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	leucine rich repeat protein [Cicer arietinum]	-	-	6.0e-28	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	36%
Blast2go	leucine rich repeat protein	-	-	0.0	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to drug	GO:0042493	Biological Process	0.0	63%
Blast2go	UV protection	GO:0009650	Biological Process	0.0	63%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Guanine-nucleotide dissociation stimulator CDC25	IPR001895	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Ribosomal protein S1, RNA-binding domain	IPR003029	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQX6

Fln msg: Distance to subject end: 27 aas, your sequence is shorter than subject: 143 - 818

Fln protein: ETTFSLLRTLDLSGNNFSGRIPPEIGQLKALGILHLSYNMLWGHIPRSLSNCTRLQWLRLSVNSLTGTIPIEFGRLGMLEHLRLAENNLSGSIPISLSNSTFLQDLSIGYNNLTGPIPSFLGLLRNLSYLYFEGNSLSGHIPS

Protein Length: 144

Fln nts: GAGAGACTACCTTTTCATTATTACGCACTTTAGATCTCTCTGGTAATAATTTCTCAGGAAGAATTCCACCAGAGATTGGCCAACTAAAAGCCCTTGGAATACTCCACCTTAGCTATAATATGCTATGGGGTCATATTCCAAGATCACTGTCTAATTGTACGCGCCTTCAGTGGCTACGACTTTCAGTAAACAGCTTGACAGGGACTATTCCAATAGAATTCGGCCGTCTGGGCATGTTGGAACATCTCCGCTTGGCAGAAAATAATTTGTCTGGAAGTATTCCAATTTCTCTGAGCAACAGCACGTTTCTCCAAGATTTGTCCATTGGATACAACAATCTCACTGGACCGATTCCTTCATTTTTGGGTCTGCTCAGAAATCTCTCTTATCTTTACTTTGAAGGAAACTCACTAAGTGGTCATATCCCTTCC

Fln Alignment:

AllPineV4_c52928___TTFSLLRTLDLSGNNFSGRIPPEIGQLKALGIL-----------------------------------HLSYNMLWGHIPRSLSNCTRLQWLRLSVNSLTGTIPIEFGRLGMLEHLRLAENNLSGSIPISLSNSTFLQDLSIGYNNLTGPIP
B8LQX6_______________TNLTQLQVLDLSNNRISGRIPRDLERLQGFKILASSKLSSNTLYEDLDIVIKGFEYTLTYVLATNTIFDLSSNNLTGEIPASIGNLSTLRLLNLSRNQLEGKIPASLGQISTLEQLDLANNYFSGKIPQELSNLTMLASLNVSSNRLCGRIP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain