SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene53038

Length: 274 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene53038
GAGAGCGGTGGAGCTTCTCTCGGGGATGGAGAGCGCCATTTCACAGATGGTGAGAACGGTCTCCGGGAAGGCGTACGTTCTGAGCTTCTTGGTGGGAGACGGGAACAACACGTGCAATGGGTCAATGAGGGTGGAAGCTTTTGCAGGACGAGCGACTCTGCAGGTTCCCTACGAATCGAAAGGGACCGGGGGCTTCAAAATGGCCAAGCTCTCATTCACAGCAGCTTCTGCCAGGACTCGCGTTGTTTCTATAGCAGCTACTATCACATGAGGA

Ace file of the UniGene sp_v2.0_unigene53038

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF642 domain containing protein	-	-	6.0e-35	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	42%
Blast2go	uncharacterized protein	-	-	8.32208e-32	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	8.32208e-32	80%
Blast2go	response to karrikin	GO:0080167	Biological Process	8.32208e-32	80%

Source	InterPros	Term	Type	Identity
Sma3	Protein of unknown function DUF642	IPR006946	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3	Sterol methyltransferase C-terminal	IPR013705	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PSP7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 52 aas, your sequence is shorter than subject: 90 - 408

Fln protein: RAVELLSGMESAISQMVRTVSGKAYVLSFLVGDGNNTCNGSMRVEAFAGRATLQVPYESKGTGGFKMAKLSFTAASARTRVVSIAATIT*

Protein Length: 91

Fln nts: GAGAGCGGTGGAGCTTCTCTCGGGGATGGAGAGCGCCATTTCACAGATGGTGAGAACGGTCTCCGGGAAGGCGTACGTTCTGAGCTTCTTGGTGGGAGACGGGAACAACACGTGCAATGGGTCAATGAGGGTGGAAGCTTTTGCAGGACGAGCGACTCTGCAGGTTCCCTACGAATCGAAAGGGACCGGGGGCTTCAAAATGGCCAAGCTCTCATTCACAGCAGCTTCTGCCAGGACTCGCGTTGTTTCTATAGCAGCTACTATCACATGAGGA

Fln Alignment:

AllPineV4_c52541___RAVELLSGMESAISQMVRTVSGKAYVLSFLVGDGNNTCNGSMRVEAFAGRATLQVPYESKGTGG-FKMAKLSFTAASARTRV
C0PSP7_______________RAIELLSGKEGIISQMVETDPGNKYTMSFLLGQAGDGCQEPMAVMAFAGDQADSFHFNNPPANGIYEPNNVTFTAKAARTRI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain