SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene52903

Length: 273 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene52903
CTACAGCTGGGGCCTCCCTTCTGGAATTGTTACAAATCAAGTCCAATTATCGATGCCCGTCAGCAGAACTATTTCACATACTGAATCTTGCAAGTGAGAAGACATTTTTGCAAACCACAACATCTGATTACATTCAGAAATTTATCTTCGAAGGAGAAGAAGGGGGGATAGAACACAAAATTAAGAATCTAGTGGCTTCCATAGGTTTCTTGGTCGAGCAGAGACTGGTCAAGGCATGGCTTACTGAGAAAGATATAGAGTCCCTCCCTTCGC

Ace file of the UniGene sp_v2.0_unigene52903

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	C2H2-like zinc finger protein [Arabidopsis thaliana] gb\|AAL91183.1\| unknown protein [Arabidopsis thaliana] gb\|AAN15705.1\| unknown protein [Arabidopsis thaliana] gb\|AEE85082.1\| C2H2-like zinc finger protein [Arabidopsis thaliana]	-	-	5.0e-08	44%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	52%
Blast2go	c2h2-like zinc finger protein	-	-	3.32332e-11	70%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, C2H2	IPR007087	-	0.0	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: E0CUZ7

Fln msg: Distance to subject end: 445 aas, your sequence is shorter than subject: 90 - 703

Fln protein: TAGASLLELLQIKSNYRCPSAELFHILNLASEKTFLQTTTSDYIQKFIFEGEEGGIEHKIKNLVASIGFLVEQRLVKAWLTEKDIESLPS

Protein Length: 91

Fln nts: CTACAGCTGGGGCCTCCCTTCTGGAATTGTTACAAATCAAGTCCAATTATCGATGCCCGTCAGCAGAACTATTTCACATACTGAATCTTGCAAGTGAGAAGACATTTTTGCAAACCACAACATCTGATTACATTCAGAAATTTATCTTCGAAGGAGAAGAAGGGGGGATAGAACACAAAATTAAGAATCTAGTGGCTTCCATAGGTTTCTTGGTCGAGCAGAGACTGGTCAAGGCATGGCTTACTGAGAAAGATATAGAGTCCCTCCCTTCGC

Fln Alignment:

AllPineV4_c52382___AGASLLELLQIK-SNYRCPSAELFHILNLASEKTFLQTTTSDYIQXXXXXXXXXXXXXXXXNLVASIGFLVEQRLVKAWLTEKDIESL
E0CUZ7_______________AGSALLDIVQSRPSRFPISSQDLFSILDDASEKTFLCAGTAESMQKYVFDGEAGKIGLEMKNLVACTCFLVEQKLVKAWLADKDAEAL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain