SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene52894

Length: 194 nt

UniGene Fasta

>sp_v2.0_unigene52894
GTGGCAAGAGTTGCAGGCTGAGATGGCTGAATTATTTGAGGCCTGATATTAAGCATGGTGACTTCTCAGAAGAAGAAGACGACATCATTTGCACCATGTATACCAGCATTGGAAGCAGGTTTAAAGATTTGAATATATAGTGCCCTTTCATTCCTTATCGAATTTGAATGCATTTTGGGTCTCTGCTCACTTTC

Ace file of the UniGene sp_v2.0_unigene52894

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	R2r3-myb transcription factor, putative n=1 Tax=Ricinus communis RepID=B9SJP4_RICCO	-	-	5.0e-14	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	r2r3-myb transcription	-	-	3.96245e-18	94%

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Thiolase	IPR002155	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Myb transcription factor	IPR015495	-	-
Sma3	Myb-like domain	IPR017877	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKH9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 301 aas, your sequence is shorter than subject: 46 - 415

Fln protein: GKSCRLRWLNYLRPDIKHGDFSEEEDDIICTMYTSIGSRFKDLNI*

Protein Length: 47

Fln nts: GTGGCAAGAGTTGCAGGCTGAGATGGCTGAATTATTTGAGGCCTGATATTAAGCATGGTGACTTCTCAGAAGAAGAAGACGACATCATTTGCACCATGTATACCAGCATTGGAAGCAGGTTTAAAGATTTGAATATATAGTGCCCTTTCATTCCTTATCGAATTTGAATGCATTTTGGGTCTCTGCTCACTTTC

Fln Alignment:

AllPineV4_c52370___GKSCRLRWLNYLRPDIKHGDFSEEEDDIICTMYTSIGSRF
B8LKH9_______________GKSCRLRWLNYLRPDIKHGDFSEEEDSIICSLYTSIGSRW

SSRs (tot: 1)

Start position	End position	Sequence	Length
68	79	AGA AGA AGA AGA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain