SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene52761

Length: 604 nt

Origin of reads: Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene52761

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative cyclic nucleotide and calmodulin-regulated ion channel protein [Hordeum vulgare subsp. vulgare]	-	-	1.0e-24	57%
FL-Next	sp=Probable cyclic nucleotide-gated ion channel 20, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	55%
Blast2go	probable cyclic nucleotide-gated ion channel chloroplastic-like	-	-	5.10271e-30	75%

Source	InterPros	Term	Type	Identity
Sma3	Cyclic nucleotide-binding domain	IPR000595	-	-
Sma3	Ion transport	IPR005821	-	-
Sma3	RmlC-like jelly roll fold	IPR014710	-	-
Sma3	Cyclic nucleotide-binding, conserved site	IPR018488	-	-

Full-Lengther Next Prediction

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
77	80	20			0.995493
80		20	80		0.995493
81		80	20		0.995493
84	20			80	0.995493
86	80	20			0.995493
87	80			20	0.995493
88			80	20	0.995493
89		80	20		0.995493
90			20	80	0.995493
93	80			20	0.995493
95			80	20	0.995493
96	50	25			0.995533
98	80	20			0.995493
99	80			20	0.995493
100	80	20			0.995493
101	20			80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain