SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene52528

Length: 223 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene52528
CGTCGTGACCTTGGCTGTCACTCATTCTGGGATGATACCGGGAATTCTCCCTGGTGCCAATGGTGGAGCAGTGTTGCCTGGTCTCGGGGCGGCATTCGGGGAGGTTTGCAGGGATTATTTGAATGGGCGGTGTGGCAGGAATGATTGCAAACATAATCACCCTCCTTATAACCAGTTGATGGCTGCCCTGTCATCTGGGAACACCATGGGCGCTCTCAGCCAG

Ace file of the UniGene sp_v2.0_unigene52528

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] gb\|AEE76829.1\| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana]	-	-	1.0e-17	61%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	76%
Blast2go	rna recognition motif -containing protein	-	-	1.59963e-28	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	1.59963e-28	78%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Zinc finger, CCCH-type	IPR000571	-	-
Sma3	Filamin/ABP280 repeat	IPR001298	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Immunoglobulin-like fold	IPR013783	-	-
Sma3	Filamin/ABP280 repeat-like	IPR017868	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9RGI0

Fln msg: Distance to subject end: 843 aas, your sequence is shorter than subject: 74 - 1129

Fln protein: VVTLAVTHSGMIPGILPGANGGAVLPGLGAAFGEVCRDYLNGRCGRNDCKHNHPPYNQLMAALSSGNTMGALSQ

Protein Length: 75

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCTGGGATGATACCGGGAATTCTCCCTGGTGCCAATGGTGGAGCAGTGTTGCCTGGTCTCGGGGCGGCATTCGGGGAGGTTTGCAGGGATTATTTGAATGGGCGGTGTGGCAGGAATGATTGCAAACATAATCACCCTCCTTATAACCAGTTGATGGCTGCCCTGTCATCTGGGAACACCATGGGCGCTCTCAGCCAG

Fln Alignment:

AllPineV4_c51933___GMIPGILPGANGGAVLPGLGAAFGEVCRDYLNGRCGRNDCKHNHPPYNQLMAALSSGNTMGALSQ
A9RGI0_______________GMIPGVTTGTSGGAVLPGLGAVFGEVCRDYLNGRCTRTDCKYNHPPQNQLMTALAAGSTMGGLSQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain