SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene51758

Length: 447 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene51758
CGTCGTGACCTTGGCTGTCACTCAGTTGGTTGGGGTTTCAGAGGGGAAAACAGGGAGAACAGAGGGGAAAACGTGGTGACCTTGGGTGTTTTTGGTGGGGCAAATTTGGAAATGGGCAGAGATGGAGGAGTCCTCTTGCAGAGGGTGTTGGAGGCGGAGAGTGGTAGCAGTTCAAGTGAGGGATCTGAGAGGCCTGTTGCCTCGTCCCAATTTCATGTTCTTGCTGTGGACGATAGTATTGTGGATCGGAAAGTCATCGAGAGGTTGCTCAAGATTTCTGCTTACAAAGTGACCACTGTAGACAGTGGAAGAAGAGCTCTGGAATTCCTTGGCCTGGATGAAGATCACAGCTCTGTAGATCTTGATAACCTCAATGTTAATATGATCATCACTGATTATTGCATGCCGGGATGACGGGTTACGACTTGCTCAAAGAATCAAGGAATC

Ace file of the UniGene sp_v2.0_unigene51758

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Two-component response regulator ARR3 n=3 Tax=Arabidopsis RepID=ARR3_ARATH	-	-	3.0e-22	57%
FL-Next	tr=Response regulator 1; Pinus pinea (Italian stone pine).	-	-	0.0	64%
Blast2go	two-component sensor protein histidine protein	-	-	7.69687e-27	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	7.69687e-27	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	red light signaling pathway	GO:0010161	Biological Process	7.69687e-27	80%
Blast2go	protein autophosphorylation	GO:0046777	Biological Process	7.69687e-27	80%
Blast2go	two-component signal transduction system (phosphorelay)	GO:0000160	Biological Process	7.69687e-27	80%
Blast2go	regulation of circadian rhythm	GO:0042752	Biological Process	7.69687e-27	80%
Blast2go	cytokinin mediated signaling pathway	GO:0009736	Biological Process	7.69687e-27	80%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	7.69687e-27	80%
Blast2go	two-component response regulator activity	GO:0000156	Molecular Function	7.69687e-27	80%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	7.69687e-27	80%
Blast2go	protein binding	GO:0005515	Molecular Function	7.69687e-27	80%
Blast2go	cytoplasm	GO:0005737	Cellular Component	7.69687e-27	80%
Blast2go	nucleus	GO:0005634	Cellular Component	7.69687e-27	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Signal transduction response regulator, receiver domain	IPR001789	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0LLL0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 91 aas, your sequence is shorter than subject: 101 - 184

Fln protein: MGRDGGVLLQRVLEAESGSSSSEGSERPVASSQFHVLAVDDSIVDRKVIERLLKISAYKVTTVDSGRRALEFLGLDEDHSSVDLDNLNVNMIITDYCMPG*

Protein Length: 102

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTGGTTGGGGTTTCAGAGGGGAAAACAGGGAGAACAGAGGGGAAAACGTGGTGACCTTGGGTGTTTTTGGTGGGGCAAATTTGGAA_-_ATGGGCAGAGATGGAGGAGTCCTCTTGCAGAGGGTGTTGGAGGCGGAGAGTGGTAGCAGTTCAAGTGAGGGATCTGAGAGGCCTGTTGCCTCGTCCCAATTTCATGTTCTTGCTGTGGACGATAGTATTGTGGATCGGAAAGTCATCGAGAGGTTGCTCAAGATTTCTGCTTACAAAGTGACCACTGTAGACAGTGGAAGAAGAGCTCTGGAATTCCTTGGCCTGGATGAAGATCACAGCTCTGTAGATCTTGATAACCTCAATGTTAATATGATCATCACTGATTATTGCATGCCGGGATGACGGGTTACGACTTGCTCAAAGAATCAAGGAATC

Fln Alignment:

AllPineV4_c51042___ASSQFHVLAVDDSIVDRKVIERLLKISAYKVTTVDSGRRALEFLGLDEDHSSVDLDNLNVNMIITDYCMPG
C0LLL0_______________STSEFHVLVVDDSVLDRKLIEKLLKISSYRVTAVDRVRKALQFLGLEDDEDDLNVDNIQVNMIITDYCMPG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain