SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene51463

Length: 254 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene51463
GAACGGAGAAAGTCATATGAGCAGATGGAGCATGATAAAGTGGCTGCATTGAAGCCTTTACTAGAGAAGTCATCAGAAGGACAGTTCAAGTTCATTTGTTTGCACTACAATGATGCCAAAACGAGGGAGCAGTTTGTCACAGCTCTTAATGTGGGAAAGATTGATTCATCATCATATATTGGATTAGAAAGTGAGGAGAACTATTGGAGTCCTCACAAAAATGACCTTCAAGGCAATGAAGTGATGAGCAAAGA

Ace file of the UniGene sp_v2.0_unigene51463

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic n=2 Tax=Arabidopsis RepID=ISE2_ARATH	-	-	8.0e-06	49%
FL-Next	sp=DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	49%
Blast2go	dead-box atp-dependent rna helicase ise2	-	-	4.27384e-07	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasmodesmata-mediated intercellular transport	GO:0010497	Biological Process	4.27384e-07	64%
Blast2go	posttranscriptional gene silencing	GO:0016441	Biological Process	4.27384e-07	64%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	4.27384e-07	64%
Blast2go	cytoplasmic stress granule	GO:0010494	Cellular Component	4.27384e-07	64%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	4.27384e-07	64%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: B9DFG3

Fln msg: Distance to subject end: 368 aas, your sequence is shorter than subject: 84 - 1171

Fln protein: ERRKSYEQMEHDKVAALKPLLEKSSEGQFKFICLHYNDAKTREQFVTALNVGKIDSSSYIGLESEENYWSPHKNDLQGNEVMSK

Protein Length: 85

Fln nts: GAACGGAGAAAGTCATATGAGCAGATGGAGCATGATAAAGTGGCTGCATTGAAGCCTTTACTAGAGAAGTCATCAGAAGGACAGTTCAAGTTCATTTGTTTGCACTACAATGATGCCAAAACGAGGGAGCAGTTTGTCACAGCTCTTAATGTGGGAAAGATTGATTCATCATCATATATTGGATTAGAAAGTGAGGAGAACTATTGGAGTCCTCACAAAAATGACCTTCAAGGCAATGAAGTGATGAGCAAAGA

Fln Alignment:

AllPineV4_c50685___ERRKSYEQ---MEHDKVAALKPLLEKSSEGQFKFICLHYNDAKTREQFVTALNVGKIDS
B9DFG3_______________EKRKRAEQRRRMELERFLALKPLLKGMEEGNLPFICLEFKDSEGREQSVPAVYLGHIDS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain