SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene51445

Length: 346 nt

Origin of reads: Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene51445
TACCGGTGGGACCTTACGGATGAAGAAGCCCAAGAATTAGGACGACGAAGTATCTATGCCGCTGGACACCGAGATGCGTTCTCGGGCAACAGTTGTAATCTATACCACGTGAAGGAGGATGGCTGGAAATTCATTGGCAACTATGATATTACGAAGCTGCACTATGAAGGACCAGGAAATGTTGCCGGTTCCCCTGGTCATGGTTACGGTTACGACCTGCGTGTAGAGGGACGAAGCTCAGCCAACCCTCCTGAAGTGACAGCCCAAGCATGATGCTTTACTACATAATTTTTTTCTGTAGTAAAATTTGAAGCAAATCTGAAGCAAAACACTACGAACGACAACA

Ace file of the UniGene sp_v2.0_unigene51445 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Proteasome subunit beta type n=1 Tax=Laccaria bicolor S238N-H82 RepID=B0CSY9_LACBS	-	-	9.99995e-41	84%
FL-Next	sp=Proteasome subunit beta type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%
Blast2go	proteasome subunit beta type-5	-	-	0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	proteasomal ubiquitin-dependent protein catabolic process	GO:0043161	Biological Process	81%
Blast2go	proteasome core complex assembly	GO:0080129	Biological Process	81%
Blast2go	proteasomal ubiquitin-independent protein catabolic process	GO:0010499	Biological Process	81%
Blast2go	endopeptidase activity	GO:0004175	Molecular Function	81%
Blast2go	protein binding	GO:0005515	Molecular Function	81%
Blast2go	proteasome core complex, beta-subunit complex	GO:0019774	Cellular Component	81%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZ27

Fln msg: your sequence is shorter than subject: 91 - 271

Fln protein: YRWDLTDEEAQELGRRSIYAAGHRDAFSGNSCNLYHVKEDGWKFIGNYDITKLHYEGPGNVAGSPGHGYGYDLRVEGRSSANPPEVTAQA*

Protein Length: 92

Fln nts: TACCGGTGGGACCTTACGGATGAAGAAGCCCAAGAATTAGGACGACGAAGTATCTATGCCGCTGGACACCGAGATGCGTTCTCGGGCAACAGTTGTAATCTATACCACGTGAAGGAGGATGGCTGGAAATTCATTGGCAACTATGATATTACGAAGCTGCACTATGAAGGACCAGGAAATGTTGCCGGTTCCCCTGGTCATGGTTACGGTTACGACCTGCGTGTAGAGGGACGAAGCTCAGCCAACCCTCCTGAAGTGACAGCCCAAGCATGA___TGCTTTACTACATAATTTTTTTCTGTAGTAAAATTTGAAGCAAATCTGAAGCAAAACACTACGAACGACAACA

Fln Alignment:

AllPineV4_c50662___YRWDLTDEEAQELGRRSIYAAGHRDAFSGNSCNLYHVKEDGWKFIGNYDITKLHY
A9NZ27_______________YRWDMPVEEAAELARRSIYHATFRDGASGGVASVYYVGPQGWKKLSGDDVAELHF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain