SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene51352

Length: 425 nt

Origin of reads: Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene51352
CGTCGTGACCTTGGCTGTCACTCATTCTAATTGAGTTGCACAAGCCACAAATCATCCATTAACAAGCAATTCAAAGGAAAGACTACAACTCAAACCTACACAACTTATTTTGCTGAGGCTTTGATTTTAGAAACTTAAATTGACAAAAAATATTGTGGTCCAAGCTGCAAGAGTTATTGGCCTAAATATGTTTTCCAAACACTTTCCCTCAAGATGCTTTCATGTTGGGATAGCAGAACATGTCACTTTTGCTGCACGGTTGACTTGTGAAGGCCTAAAGCCTCTCTATGCTATATATTCCTATTTTTAAAAAAAGGGCCTATGATCATGTTATACATAATGTAGACCTGTAGAAATTGACGGATAAAGCAGGGCTAGTTCGAGCAGATGGTTCAATTCATAATGGAGCATTAGATGTGAAACTT

Ace file of the UniGene sp_v2.0_unigene51352 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	1-deoxy-D-xylulose 5-phosphate synthase type I n=3 Tax=Pinaceae RepID=A7LA00_PICAB	-	-	3.0e-20	77%
FL-Next	tr=1-deoxy-D-xylulose 5-phosphate synthase type I; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	77%
Blast2go	1-deoxy-d-xylulose 5-phosphate synthase	-	-	5.51243e-20	74%

Source	InterPros	Term	Type	Identity
Sma3	Transketolase, N-terminal	IPR005474	-	-
Sma3	Transketolase-like, pyrimidine-binding domain	IPR005475	-	-
Sma3	Transketolase, C-terminal	IPR005476	-	-
Sma3	Deoxyxylulose-5-phosphate synthase	IPR005477	-	-
Sma3	Transketolase-like, C-terminal	IPR015941	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A7LA00

Fln msg: Separated hits, possible frame ERROR between 144 and 179, and overlapping frame ERROR between 307 and 306, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 201 aas, your sequence is shorter than subject: 143 - 717

Fln protein: RRDLGCHSF*LSCTSHKSSINKQFKGKTTTQTYTTYFAEALILET*IxxxxxxxxxxxxxGLNMFSKHFPSRCFHVGIAEHVTFAARLTCEGLKPLYAIYSxxxKKRAYDHVIHNVDL*KLTDKAGLVRADGSIHNGALDVKL

Protein Length: 144

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCTAATTGAGTTGCACAAGCCACAAATCATCCATTAACAAGCAATTCAAAGGAAAGACTACAACTCAAACCTACACAACTTATTTTGCTGAGGCTTTGATTTTAGAAACTTAAATTGAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGGCCTAAATATGTTTTCCAAACACTTTCCCTCAAGATGCTTTCATGTTGGGATAGCAGAACATGTCACTTTTGCTGCACGGTTGACTTGTGAAGGCCTAAAGCCTCTCTATGCTATATATTCCTxxxxxxTTAAAAAAAGGGCCTATGATCATGTTATACATAATGTAGACCTGTAGAAATTGACGGATAAAGCAGGGCTAGTTCGAGCAGATGGTTCAATTCATAATGGAGCATTAGATGTGAAACTT

Fln Alignment:

AllPineV4_c50542___KQFKGKXXXXXXXXYFAEALILET*IDxxxxxxxxxxxxGLNMFSKHFPSRCFHVGIAEH--VTFAARLTCEGLKPLYAIYSYxKKRAYDHVIHNVDL*KL-----TDKAGLVRADGSIHNGALDV
A7LA00_______________KQFKGKAPTQTYTAYFAEALISEADIDxxxxxxxxxxxxGLNMFSKRFPSRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSxLQRAYDQVIHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDV

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
128	75		25		0.996473
129		25		75	0.996473
130	75		25		0.996473
131	25			75	0.996473
285	60			40	1.0
287		40		60	1.0
308		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain