SustainPineDB

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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene51323

Length: 353 nt

Origin of reads: Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene51323
CACGTAGTGAATAACAACTACGAACCGTGGGGAATATCTGCCATTGGAGGAAGCATGCATCCGACCATCAGAAGTGAAGGAAATCGGTTCGTGGCCTCAGATAATGAGAAGGAGGTGCAAAGCGTGAATGTCAGCCTGAATCTTCTTGTGGCAATGGGTGGCTTTGGGTCTCAGTCGGCGATCTATTTCTCAATGGAGCATACTCAAAGCATCTGGTACAGGAACAGCTTTTCCACCGTACAGTGGAGGGCAAACATTTGCAGTTGGCAGTGGAAGCTCTGTACAAACGATGACTCGGGAGGCGGGAGCTCTGGTGGGCTAAGTTCCCTCGAAATTTTGTGGATCTGAATTAT

Ace file of the UniGene sp_v2.0_unigene51323 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00544, Pec_lyase_C, Pectate lyase	-	-	7.0e-08	56%
FL-Next	sp=Major pollen allergen Jun a 1; Juniperus ashei (Ozark white cedar).	-	-	0.0	63%
Blast2go	pectate lyase	-	-	3.13145e-11	74%

Source	InterPros	Term	Type	Identity
Sma3	Pectate lyase/Amb allergen	IPR002022	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Pectate lyase, N-terminal	IPR007524	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	AmbAllergen	IPR018082	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: P81294

Fln msg: Separated hits, possible frame ERROR between 117 and 129, your sequence is shorter than subject: 98 - 367

Fln protein: HVVNNNYEPWGISAIGGSMHPTIRSEGNRFVASDNEKExxxxxCQPESSCGNGWLWVSVGDLFLNGAYSKHLVQEQLFHRTVEGKHLQLAVEALYKR*

Protein Length: 99

Fln nts: CACGTAGTGAATAACAACTACGAACCGTGGGGAATATCTGCCATTGGAGGAAGCATGCATCCGACCATCAGAAGTGAAGGAAATCGGTTCGTGGCCTCAGATAATGAGAAGGAGGTxxxxxxxxxxxxATGTCAGCCTGAATCTTCTTGTGGCAATGGGTGGCTTTGGGTCTCAGTCGGCGATCTATTTCTCAATGGAGCATACTCAAAGCATCTGGTACAGGAACAGCTTTTCCACCGTACAGTGGAGGGCAAACATTTGCAGTTGGCAGTGGAAGCTCTGTACAAACGATGACTCGGGAGGCGGGAGCTCTGGTGGGCTAAGTTCCCTCGAAATTTTGTGGATCTGAATTAT

Fln Alignment:

AllPineV4_c50505___HVVNNNYEPWGISAIGGSMHPTIRSEGNRFVASDN--EKEVxxxxCQPESSCGNGWLWVSVGDLFLNGAY
P81294_______________HVANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVxxxxCESPSACAN-WVWRSTRDAFINGAY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain