SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene51205

Length: 259 nt

Origin of reads: Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene51205
ATTTCTACTCTGGCTGTCTTGGGAATGAGTGAAAATAAATTCACTGGTAACATTCCACAAGAATTCGGCCAACTCACAAGTCTCCAATCCCTTTACCTCTTTTACAATGAATTATCAGGCTCCATTCCCCCTTCTTTATCAAATCTAGTTAACTTGAGTGAGCTTTATTTATGGGGAAATCAACTTAGTGGAAAAATACCAAATTTCATTGGAAATTGTTCAAAACTCAAAGATCTCATTCTAGCCCATAACATGTTGA

Ace file of the UniGene sp_v2.0_unigene51205 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	LRR_4 domain containing protein	-	-	2.0e-06	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	40%
Blast2go	hcr2-	-	-	5.4956e-19	65%

Source	InterPros	Term	Type	Identity
Sma3	Fumarate lyase	IPR000362	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A947

Fln msg: Distance to subject end: 40 aas, your sequence is shorter than subject: 86 - 287

Fln protein: ISTLAVLGMSENKFTGNIPQEFGQLTSLQSLYLFYNELSGSIPPSLSNLVNLSELYLWGNQLSGKIPNFIGNCSKLKDLILAHNML

Protein Length: 87

Fln nts: ATTTCTACTCTGGCTGTCTTGGGAATGAGTGAAAATAAATTCACTGGTAACATTCCACAAGAATTCGGCCAACTCACAAGTCTCCAATCCCTTTACCTCTTTTACAATGAATTATCAGGCTCCATTCCCCCTTCTTTATCAAATCTAGTTAACTTGAGTGAGCTTTATTTATGGGGAAATCAACTTAGTGGAAAAATACCAAATTTCATTGGAAATTGTTCAAAACTCAAAGATCTCATTCTAGCCCATAACATGTTGA

Fln Alignment:

AllPineV4_c50354___ISTLAVLGMSENKFTGNIPQEFGQLTSLQSLYLFYNELSGSIPPSLSNLVNLSELYL
D5A947_______________LTKLSSLWLAENKLSGTIPASITNCRRLAKLYLYHNQLHGNLPESLGRLQSLAYLYL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain