SustainPineDB

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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene51203

Length: 272 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene51203
CCAATTATGTGCAATGCTTTACAGGATGGCCACACGAACAGACTCATTCGATTGGACTTAAATTCTACTTTACATTCTGCATGTCCTTCTATATATATTCTTTGTCTCTCTTATGGTTCGAAGAGAAGAAGAAAGACACAACGGCAATGGTTTTACATCACATCGTGACCATGATCACCGTAGGTCTATCAGGATATATTCAACATTATCGAATAGGAGTTTGCATCATGATGCTCTTTGACATTTGTGATATCGCACTGGAGTTAGCCAAA

Ace file of the UniGene sp_v2.0_unigene51203

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[U] COG5058 Protein transporter of the TRAM (translocating chain-associating membrane) superfamily, longevity assurance factor	-	-	8.0e-07	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	36%
Blast2go	asc1-like protein	-	-	5.51655e-14	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to molecule of fungal origin	GO:0002238	Biological Process	5.51655e-14	59%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	5.51655e-14	59%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	5.51655e-14	59%
Blast2go	plasma membrane	GO:0005886	Cellular Component	5.51655e-14	59%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUL2

Fln msg: Distance to subject end: 104 aas, your sequence is shorter than subject: 90 - 288

Fln protein: NYVQCFTGWPHEQTHSIGLKFYFTFCMSFYIYSLSLLWFEEKKKDTTAMVLHHIVTMITVGLSGYIQHYRIGVCIMMLFDICDIALELAK

Protein Length: 91

Fln nts: CCAATTATGTGCAATGCTTTACAGGATGGCCACACGAACAGACTCATTCGATTGGACTTAAATTCTACTTTACATTCTGCATGTCCTTCTATATATATTCTTTGTCTCTCTTATGGTTCGAAGAGAAGAAGAAAGACACAACGGCAATGGTTTTACATCACATCGTGACCATGATCACCGTAGGTCTATCAGGATATATTCAACATTATCGAATAGGAGTTTGCATCATGATGCTCTTTGACATTTGTGATATCGCACTGGAGTTAGCCAAA

Fln Alignment:

AllPineV4_c50352___QCFTGWPHEQTHSIGLKFYFTFCMSFYIYSLS-LLWFEEKKKDTTAMVLHHIVTMITVGLSGYIQHYRIGVCIMMLFDICDIALELAK
A9NUL2_______________QLFKGWPNH-TIKFPLKLFYMCQCGFYVYSIAALLMWETRRKDFTIMMSHHVITVFLIGYSYITRFFRSGSIVLALHDTSDVFMETAK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain