SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene51001

Length: 301 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene51001
CTTCCGACCGTGCTTCCGTCAACGTCATCGTTGACCCCAAGTCCGATCGTCTCCAACTCCTCCAACCTTTCAAACCTTGGGACGGAAAGGACCCCAAGGATCTCCCCGTTCTCATCAAGGCTACTGGAAAGTGCACCACCGATCACATCTCTGCCGGTGGACCTTGGCTCAAGTACCGAGGTCACCTCGAGAACATTTCCCAAAACTGCTTGATCGGTGCCATCAACGAGGCTAACGGAGAAGCCAACAAGATCCAAAACGTTCTTACTGGTGAATGGGCTGGTGTTCCTCAAGTCGCTGC

Ace file of the UniGene sp_v2.0_unigene51001

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Aconitase n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8NMJ8_COPC7	-	-	2.94273e-44	82%
FL-Next	sp=Aconitate hydratase, mitochondrial; Gracilaria verrucosa (Red alga).	-	-	0.0	62%
Blast2go	aconitate hydratase	-	-	0.0	84%

Source	InterPros	Term	Type	Identity
Sma3	Aconitase A/isopropylmalate dehydratase small subunit, swivel	IPR000573	-	-
Sma3	Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha	IPR001030	-	-
Sma3	Aconitase, mitochondrial-like	IPR006248	-	-
Sma3	Aconitase/3-isopropylmalate dehydratase, swivel	IPR015928	-	-
Sma3	Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3	IPR015931	-	-
Sma3	Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2	IPR015932	-	-
Sma3	Aconitase/isopropylmalate dehydratase	IPR015937	-	-
Sma3	Aconitase family, 4Fe-4S cluster binding site	IPR018136	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P49609

Fln msg: Distance to subject end: 133 aas, your sequence is shorter than subject: 99 - 779

Fln protein: SDRASVNVIVDPKSDRLQLLQPFKPWDGKDPKDLPVLIKATGKCTTDHISAGGPWLKYRGHLENISQNCLIGAINEANGEANKIQNVLTGEWAGVPQVA

Protein Length: 100

Fln nts: CTTCCGACCGTGCTTCCGTCAACGTCATCGTTGACCCCAAGTCCGATCGTCTCCAACTCCTCCAACCTTTCAAACCTTGGGACGGAAAGGACCCCAAGGATCTCCCCGTTCTCATCAAGGCTACTGGAAAGTGCACCACCGATCACATCTCTGCCGGTGGACCTTGGCTCAAGTACCGAGGTCACCTCGAGAACATTTCCCAAAACTGCTTGATCGGTGCCATCAACGAGGCTAACGGAGAAGCCAACAAGATCCAAAACGTTCTTACTGGTGAATGGGCTGGTGTTCCTCAAGTCGCTGC

Fln Alignment:

AllPineV4_c50115___DRASVNVIVDPKSDRLQLLQPFKPWDGKDPKDLPVLIKATGKCTTDHISAGGPWLKYRGHLENISQNCLIGAINEANGEANKIQNVLTGEWAGVPQVA
P49609_______________DSTSILVQIDPDSQRLSFLEPFPAWDGKDYTDMPVLIKARGKCTTDHISMAGPWLKFRGHLDNISNNMLIGAVNDENGEINNVKNAVTGEYGTVPDTA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain