SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene50876

Length: 396 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene50876
CTCAGGTCGGAGAGGCACCACTGATATGGGATGAGGATGTTGCTGGTTATGCACGGTGGTGGGCAGAGCAGAGGCGCAGTGACTGTGAACTGAGGCATTCGTACGGGCCGTACGGGGAGAACATATTCTGGGGAAGTGGAAAGAATTGGCAGCCCTACGATGCAGTTTTTGCCTGGGTGAACGAGAAAAAGTACTACGACCATACAACTAATTCGTGCATTGGAGATGAGATGTGTGGCCACTACACGCAGATAGTGTGGAAGAACTCCAGAAGCCTGGGCTGTGCAAGGGTTGTTTGCTACAACGGTCAGATTTTCATGACGTGCAATTACTTTCCACCCGGAAACTACATCGGAGAGAAACCTTATTAGACCTGTCTGGGCCTCATACTCATTC

Ace file of the UniGene sp_v2.0_unigene50876

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SCP-like extracellular protein domain-containing protein [Arabidopsis thaliana] dbj\|BAB08798.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAO29948.1\| Unknown protein [Arabidopsis thaliana] gb\|AAP13357.1\| At5g57625 [Arabidopsis thaliana] dbj\|BAE991	-	-	1.4013e-45	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Blast2go	sts14 protein	-	-	0.0	77%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Allergen V5/Tpx-1-related	IPR001283	-	-
Sma3	Ves allergen	IPR002413	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	CAP domain	IPR014044	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Allergen V5/Tpx-1-related, conserved site	IPR018244	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXZ7

Fln msg: your sequence is shorter than subject: 123 - 177

Fln protein: QVGEAPLIWDEDVAGYARWWAEQRRSDCELRHSYGPYGENIFWGSGKNWQPYDAVFAWVNEKKYYDHTTNSCIGDEMCGHYTQIVWKNSRSLGCARVVCYNGQIFMTCNYFPPGNYIGEKPY*

Protein Length: 124

Fln nts: CTCAGGTCGGAGAGGCACCACTGATATGGGATGAGGATGTTGCTGGTTATGCACGGTGGTGGGCAGAGCAGAGGCGCAGTGACTGTGAACTGAGGCATTCGTACGGGCCGTACGGGGAGAACATATTCTGGGGAAGTGGAAAGAATTGGCAGCCCTACGATGCAGTTTTTGCCTGGGTGAACGAGAAAAAGTACTACGACCATACAACTAATTCGTGCATTGGAGATGAGATGTGTGGCCACTACACGCAGATAGTGTGGAAGAACTCCAGAAGCCTGGGCTGTGCAAGGGTTGTTTGCTACAACGGTCAGATTTTCATGACGTGCAATTACTTTCCACCCGGAAACTACATCGGAGAGAAACCTTATTAG___ACCTGTCTGGGCCTCATACTCATTC

Fln Alignment:

AllPineV4_c49965___QVGEAPLIWDEDVAGYARWWAEQRRSDCELRHSYGPYGENIFWGSGKNWQPYDAVFAWVNEKKYYDHTTNSCIGDEMCGHYTQIVWKNSRSLGCARVVCYNGQIFMTCNYFPPGNYIGEKPY
A9NXZ7_______________KVGDPPLRWSQTLAHYAQWWANQRRWDCSLTHSNGPYGENIFWGSGKDWQPKDAVSAWIGEYRWYNYNRNSCNGYQQCGHYTQIVWRKSRSVGCARVVCYNGDVFMTCNYFPPGNYVGQKPY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain