SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene50813

Length: 400 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene50813
CTCTTCTGTAGTGAGAGGTTTGGTTGCTGTGGGCTTGCTTGCCTTCAAGGGTTTATACAGTACAGGGAAGGAAGTTTCACGTGATATAAGAAAAGTTTTGGAGCTTTTAGTTAAAAAAATCAAAACGAAGATCCAAAATGGAAAAGATAAATACCAATTTTTCCCTTTATTAGCACAAGCAGCTTCTCTGGAGGACATGGTTAACAGTTGGGCATATGCGACACAGAGCTTGGAAACCAATTCCTGCATTCCTGTAGTGGACCCTTCAGCATGTGCCGAGGAAAGGTCAGAGTTAAGCTCTCAAGCACTTACTGATATTAACATGGTTGGTCATGAGGAAGTGAATGTTCAAGCAACCTCTGATGCTTTTCCAGTTTCTTATTTAAATAACAAAAAGGTT

Ace file of the UniGene sp_v2.0_unigene50813

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AAA-type ATPase family protein [Arabidopsis thaliana] gb\|AEE75622.1\| AAA-type ATPase family protein [Arabidopsis thaliana]	-	-	5.0e-13	40%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	44%
Blast2go	aaa-type atpase family protein	-	-	1.34712e-18	70%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S16	IPR000307	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6H211

Fln msg: Distance to subject end: 328 aas, your sequence is shorter than subject: 133 - 1914

Fln protein: SSVVRGLVAVGLLAFKGLYSTGKEVSRDIRKVLELLVKKIKTKIQNGKDKYQFFPLLAQAASLEDMVNSWAYATQSLETNSCIPVVDPSACAEERSELSSQALTDINMVGHEEVNVQATSDAFPVSYLNNKKV

Protein Length: 134

Fln nts: CTCTTCTGTAGTGAGAGGTTTGGTTGCTGTGGGCTTGCTTGCCTTCAAGGGTTTATACAGTACAGGGAAGGAAGTTTCACGTGATATAAGAAAAGTTTTGGAGCTTTTAGTTAAAAAAATCAAAACGAAGATCCAAAATGGAAAAGATAAATACCAATTTTTCCCTTTATTAGCACAAGCAGCTTCTCTGGAGGACATGGTTAACAGTTGGGCATATGCGACACAGAGCTTGGAAACCAATTCCTGCATTCCTGTAGTGGACCCTTCAGCATGTGCCGAGGAAAGGTCAGAGTTAAGCTCTCAAGCACTTACTGATATTAACATGGTTGGTCATGAGGAAGTGAATGTTCAAGCAACCTCTGATGCTTTTCCAGTTTCTTATTTAAATAACAAAAAGGTT

Fln Alignment:

AllPineV4_c49891___FKGLYSTGKEVSRDIRKVLELLVKKIKTKIQNGKDKYQFFPLLAQAASLEDMVNSWAYATQSLETNSCIPVVDPS---------ACAEERSEL--SSQALTDI-NMVGHEEV
F6H211_______________YRGAYVSLREVSLEVRKVLELLVDQINAKIQSGKDRYEFGRILSQVACLEDMVNSWVYTLQSLEVDGQMTVVNPKPGTVGSSSYACGDDVDNLIESKECGPNVSNRSSHEEV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain