SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene50810

Length: 282 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene50810
GTGGGCTGCGAGATCCAATTGGAAACACTCTGGAATGACGAAAGCGAGGCACCTCTGGAGTTGAGGGAGTTGAATGTTATTGTTAATGACCTTCTACAGTTACCGAAGTCAATTGGGCAGTTGAAGCACCTGGAAAAGATCCAACTGACTTACCCTGTCAAAACATTGCCTGAGGAATTCTTTCATCTCCGATCCCTGAAACACTTGAGAATGCGTGCAAGCATGAAGTTGCTGCCAAACGTTGCTGCCAAACGCGTTCGGGAATCTTACAAATCTCCAACA

Ace file of the UniGene sp_v2.0_unigene50810 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative TIR/NBS/LRR disease resistance protein (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8I7_PINTA	-	-	6.0e-12	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Blast2go	tir nbs lrr disease resistance protein	-	-	1.9176e-13	65%

Source	InterPros	Term	Type	e value	Identity
Sma3	Leucine-rich repeat	IPR001611	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LMZ7

Fln msg: Distance to subject end: 377 aas, your sequence is shorter than subject: 94 - 618

Fln protein: VGCEIQLETLWNDESEAPLELRELNVIVNDLLQLPKSIGQLKHLEKIQLTYPVKTLPEEFFHLRSLKHLRMRASMKLLPNVAAKRVRESYKSPT

Protein Length: 95

Fln nts: GTGGGCTGCGAGATCCAATTGGAAACACTCTGGAATGACGAAAGCGAGGCACCTCTGGAGTTGAGGGAGTTGAATGTTATTGTTAATGACCTTCTACAGTTACCGAAGTCAATTGGGCAGTTGAAGCACCTGGAAAAGATCCAACTGACTTACCCTGTCAAAACATTGCCTGAGGAATTCTTTCATCTCCGATCCCTGAAACACTTGAGAATGCGTGCAAGCATGAAGTTGCTGCCAAACGTTGCTGCCAAACGCGTTCGGGAATCTTACAAATCTCCAACA

Fln Alignment:

AllPineV4_c49888___QLETLWNDESEAPLELRELNVIVNDLLQLPKSIGQLKHLEKIQLT-----YPVKTLPEEFFHLRSLKHLRMRA-SMKLLPN
B8LMZ7_______________KLKKLWRAESQAPLELRELNVYA-PLSMFPKSIGQMKHIEKIVVTCMPDLIHLKSLPEEFCQLSSLKYLHLLCPDMKSLPD

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain