SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene50764

Length: 292 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene50764
GCTGCCATTTGAGGGAGGCTGTAACACAAGTCCAGCACACCCTGAAACCTGAAATCCCCATTCTTGATGACAGGCACACGGCCTTGAGTCTGAAGAAGTTAAGGTGGAAGGTAACCAGCTGCTTTATCGAATACCAGAGGAGAATATTAATGGCAGTGATAATGAGACAGAGCCTGTTTACTGCTTCACATTTGGGAACTCAGATCTGATCCCCATTGAAGCGAGTATCATTGGAAATTATCACCAGCAAAACCTCTGGATAGAATATGATCTGGAAAACTCTCGGATTGGG

Ace file of the UniGene sp_v2.0_unigene50764

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	aspartyl protease family protein [Arabidopsis thaliana] emb\|CAB82992.1\| putative protein [Arabidopsis thaliana] gb\|AAT85726.1\| At5g02190 [Arabidopsis thaliana] gb\|AAU94418.1\| At5g02190 [Arabidopsis thaliana] dbj\|BAE99007.1\| hypothetical protein [Arabidops	-	-	6.0e-15	56%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	62%
Blast2go	aspartyl protease family protein	-	-	1.31504e-19	74%

Source	ECs	Term	Type	e value	Identity
Blast2go	Arsenite-transporting ATPase.	EC:3.6.3.16	-	1.31504e-19	74%
Blast2go	Glutathione gamma-glutamylcysteinyltransferase.	EC:2.3.2.15	-	1.31504e-19	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	arsenite transport	GO:0015700	Biological Process	1.31504e-19	74%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	1.31504e-19	74%
Blast2go	programmed cell death	GO:0012501	Biological Process	1.31504e-19	74%
Blast2go	indole glucosinolate catabolic process	GO:0042344	Biological Process	1.31504e-19	74%
Blast2go	phytochelatin biosynthetic process	GO:0046938	Biological Process	1.31504e-19	74%
Blast2go	defense response by callose deposition in cell wall	GO:0052544	Biological Process	1.31504e-19	74%
Blast2go	response to arsenic-containing substance	GO:0046685	Biological Process	1.31504e-19	74%
Blast2go	defense response to bacterium	GO:0042742	Biological Process	1.31504e-19	74%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	1.31504e-19	74%
Blast2go	cadmium ion binding	GO:0046870	Molecular Function	1.31504e-19	74%
Blast2go	arsenite-transmembrane transporting ATPase activity	GO:0015446	Molecular Function	1.31504e-19	74%
Blast2go	peptidase activity	GO:0008233	Molecular Function	1.31504e-19	74%
Blast2go	copper ion binding	GO:0005507	Molecular Function	1.31504e-19	74%
Blast2go	glutathione gamma-glutamylcysteinyltransferase activity	GO:0016756	Molecular Function	1.31504e-19	74%
Blast2go	cytosol	GO:0005829	Cellular Component	1.31504e-19	74%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	1.31504e-19	74%
Blast2go	phytochelatin transmembrane transporter activity	GO:0071992	Biological Process	1.31504e-19	74%
Blast2go	phytochelatin transmembrane transport	GO:0071994	Biological Process	1.31504e-19	74%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase A1	IPR001461	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HL87

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 17 aas, your sequence is shorter than subject: 97 - 404

Fln protein: LPFEGGCNTSPAHPET*NPHS**QAHGLESEEVKVEGNQLLYRIPEENINGSDNETEPVYCFTFGNSDLIPIEASIIGNYHQQNLWIEYDLENSRIG

Protein Length: 98

Fln nts: GCTGCCATTTGAGGGAGGCTGTAACACAAGTCCAGCACACCCTGAAACCTGAAATCCCCATTCTTGATGACAGGCACACGGCCTTGAGTCTGAAGAAGTTAAGGTGGAAGGTAACCAGCTGCTTTATCGAATACCAGAGGAGAATATTAATGGCAGTGATAATGAGACAGAGCCTGTTTACTGCTTCACATTTGGGAACTCAGATCTGATCCCCATTGAAGCGAGTATCATTGGAAATTATCACCAGCAAAACCTCTGGATAGAATATGATCTGGAAAACTCTCGGATTGGG

Fln Alignment:

AllPineV4_c49830___EVKVEGNQLLYRIPEENINGSDNETEPVYCFTFGNSDLIPIEASIIGNYHQQNLWIEYDLENSRIG
F6HL87_______________EMKVSGDRLLYRVPGE-VRGSDS----VYCFTFGNSDLLAVEAYVIGHHHQQNVWMEFDLEKSRIG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain