SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene50761

Length: 301 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene50761
AGGCAGGTATCTCCAAGGACGGGCAGACCCGCGAGCACGCCCTGCTGGCCTACACCCTGGGTGTGAAGCAGCTGATCGTGGCCCTCAACAAGATGGATGCCACCGAGCCCAAGTACGACAAGAAGCGTTACGAGGAGATCGTGAAGGAGGTGTCCAACTACATCAAGAAGGTCGGATACAATCCCGCCAAGGTCAACTTCGTGCCCATCTCCGGGTTCCAGGGTGACAACATGATCGAGCGCTCCACCAACATGGACTGGTACAAGGGACCCATCCTGCTAGGAAGGACTACTAGGAACCT

Ace file of the UniGene sp_v2.0_unigene50761

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Elongation factor 1 alpha (Fragment) n=3 Tax=Eukaryota RepID=A7J577_9LECA	-	-	1.99993e-41	88%
FL-Next	sp=Elongation factor 1-alpha; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Blast2go	elongation factor 1-alpha	-	-	0.0	90%

Source	InterPros	Term	Type	Identity
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Translation elongation factor EFTu/EF1A, C-terminal	IPR004160	-	-
Sma3	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	-
Sma3	Translation elongation factor EF1A, eukaryotic/archaeal	IPR004539	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PSF0

Fln msg: Distance to subject end: 224 aas, your sequence is shorter than subject: 99 - 448

Fln protein: AGISKDGQTREHALLAYTLGVKQLIVALNKMDATEPKYDKKRYEEIVKEVSNYIKKVGYNPAKVNFVPISGFQGDNMIERSTNMDWYKGPILLGRTTRN

Protein Length: 100

Fln nts: AGGCAGGTATCTCCAAGGACGGGCAGACCCGCGAGCACGCCCTGCTGGCCTACACCCTGGGTGTGAAGCAGCTGATCGTGGCCCTCAACAAGATGGATGCCACCGAGCCCAAGTACGACAAGAAGCGTTACGAGGAGATCGTGAAGGAGGTGTCCAACTACATCAAGAAGGTCGGATACAATCCCGCCAAGGTCAACTTCGTGCCCATCTCCGGGTTCCAGGGTGACAACATGATCGAGCGCTCCACCAACATGGACTGGTACAAGGGACCCATCCTGCTAGGAAGGACTACTAGGAACCT

Fln Alignment:

AllPineV4_c49827___AGISKDGQTREHALLAYTLGVKQLIVALNKMDATEPKYDKKRYEEIVKEVSNYIKKVGYNPAKVNFVPISGFQGDNMIERSTNMDWYKGPILL
C0PSF0_______________AGISKDGQTREHALLAFTLGVRQMICCCNKMDATTPKYSKARYEEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain