SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene50740

Length: 459 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene50740
AGGATTCAAAATATCCGCGTCGGCTTTGGCGACTGACGGACGAAAATCTTTATAATGTGGCTGAACAATCTTCTGTGCGTGGAATTAGCATGGTTCATGGAAATGTCCCTCATCAATCTTTTGAAAACCTTTCTGGCATTTGCAACCTAAGTGACTTGCGGATCCTTAGGGCTGAAGGTTATTTTGTTGAACGCGTATTCAGCAGTAGCGAGCTACCGAAACTAATGTATCTCCACTGGGGAAACTGTCCGAGCGCCTCGTTACCTTTTTCGCTTCCAATAAAGAATTTAAGAGTGTTACATATAGAGGGGAGAAAATTGGAAACACTGTGGCAACATGAAACTCAGGTACCTTTGCAGTTGAGGAAATTGTATATTGAAGGTTCTCTTTCAAAGGTTCCAGAGTCCATTGGCAAGCTGAAGCACCTAGAAGAATTTGTCATGTCCATGAGTTATCTTG

Ace file of the UniGene sp_v2.0_unigene50740

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative TIR/NBS/LRR disease resistance protein (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8I7_PINTA	-	-	4.0e-19	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Blast2go	tir nbs lrr disease resistance protein	-	-	0.0	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQE2

Fln msg: Distance to subject end: 397 aas, your sequence is shorter than subject: 152 - 1071

Fln protein: DSKYPRRLWRLTDENLYNVAEQSSVRGISMVHGNVPHQSFENLSGICNLSDLRILRAEGYFVERVFSSSELPKLMYLHWGNCPSASLPFSLPIKNLRVLHIEGRKLETLWQHETQVPLQLRKLYIEGSLSKVPESIGKLKHLEEFVMSMSYL

Protein Length: 153

Fln nts: AGGATTCAAAATATCCGCGTCGGCTTTGGCGACTGACGGACGAAAATCTTTATAATGTGGCTGAACAATCTTCTGTGCGTGGAATTAGCATGGTTCATGGAAATGTCCCTCATCAATCTTTTGAAAACCTTTCTGGCATTTGCAACCTAAGTGACTTGCGGATCCTTAGGGCTGAAGGTTATTTTGTTGAACGCGTATTCAGCAGTAGCGAGCTACCGAAACTAATGTATCTCCACTGGGGAAACTGTCCGAGCGCCTCGTTACCTTTTTCGCTTCCAATAAAGAATTTAAGAGTGTTACATATAGAGGGGAGAAAATTGGAAACACTGTGGCAACATGAAACTCAGGTACCTTTGCAGTTGAGGAAATTGTATATTGAAGGTTCTCTTTCAAAGGTTCCAGAGTCCATTGGCAAGCTGAAGCACCTAGAAGAATTTGTCATGTCCATGAGTTATCTTG

Fln Alignment:

AllPineV4_c49800___DSKYPRRLWRLTDENLYNVAEQSSVRGISMVHGNVPHQSFENLSGICNLSDLRILRAEGYFVERVFSSSELPKLMYLHWGNCPSASLPFSLPIKNLRVLHIEGRKLETLWQHETQVPLQLRKLYIEGSLSKVPESIGKLKHLEEFVM
C0PQE2_______________NSEYPRRIWRMTDSLLHNVSDQSPVRGISMVHRNGSERS-------CNLSNCKLLKAESHFVEQVLSNGQLLPLIYLRWENYPKSSLPPSLPSMNLRVLHIQGKQLKTLWQHESQAPLQLRELYVNAPLSKVPESIGTLKYLEKIVL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain