SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene50301

Length: 796 nt

Origin of reads: Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene50301

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Cytochrome P450 93A2 dbj\|BAA13076.1\| cytochrome P-450 (CYP93A2) [Glycine max]	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	72%
Blast2go	cytochrome p450 monooxygenase cyp736b	-	-	76%

Source	InterPros	Term	Type	Identity
Sma3	Protease inhibitor I4, serpin	IPR000215	-	-
Sma3	Hemocyanin, copper-type	IPR000896	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Lipoxygenase, C-terminal	IPR013819	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNX9

Fln msg: Overlapping hits, possible frame ERROR between 229 and 226, and overlapping frame ERROR between 699 and 696, STOP codon was not found. Distance to subject end: 3 aas, your sequence is shorter than subject: 265 - 462

Fln protein: QNQLLEKVIEEHVGQKRDNISRDLVDVLLAAYADKDRVFQISRDSIKAILFDMLLGGSDTGPTIMEWAMSEVLRxxxVMKKLQDELERVVGMDRMVSESDLPQLVYLQAMVKETLRLHPAASLVERRLYAESCNVMGYEIPHKAHVIINLWAIGRDPNSWEDAEIFKPERFMERGGSEVDANGLDQNFAWLPFGAGRRTCPGRQLGTLLIEFGLAQLFHCFNWRLPLDDMxxxxQELDMTERFNGITLPRAHELRAIPIPRLECI

Protein Length: 266

Fln nts: ACAAAACCAGTTGTTAGAAAAAGTAATAGAGGAACACGTTGGGCAGAAGCGGGACAACATCAGCCGTGATCTTGTGGATGTGTTACTTGCAGCCTATGCGGATAAGGATCGAGTGTTCCAAATTTCACGAGATAGTATAAAAGCAATTCTCTTTGATATGTTGCTTGGTGGCTCGGACACGGGACCTACGATAATGGAGTGGGCAATGTCGGAAGTGCTGAGAxxxxxxxxxGTGATGAAGAAACTTCAGGACGAACTGGAACGCGTCGTCGGAATGGATCGCATGGTATCCGAATCTGATCTGCCTCAACTCGTTTATTTACAAGCTATGGTGAAAGAAACGCTTCGACTCCACCCAGCGGCGTCTCTTGTTGAGCGCCGCTTATACGCTGAGTCCTGCAATGTAATGGGCTATGAAATCCCTCATAAGGCTCACGTTATCATTAACCTGTGGGCGATTGGGAGGGACCCAAATTCCTGGGAAGACGCTGAAATTTTCAAGCCAGAAAGATTCATGGAAAGAGGTGGCTCGGAGGTAGATGCAAATGGACTAGATCAAAACTTTGCGTGGCTTCCCTTCGGAGCAGGCAGGAGAACATGCCCCGGACGGCAATTGGGAACGCTTTTGATAGAGTTTGGGTTAGCGCAACTCTTTCACTGCTTCAACTGGAGGCTTCCCTTGGATGACATGAAxxxxxxxxxTCAAGAACTGGACATGACTGAAAGGTTTAATGGAATCACGTTGCCCAGGGCTCATGAACTCCGGGCTATTCCAATACCACGCCTTGAATGTATTGG

Fln Alignment:

AllPineV4_c49264___LLEKVIEEHVGQKRDNISRDLVDVLLAAYADKDRVFQISRDSIKAILFDMLLGGSDTGPTIMEWAMSEVLRNxAVMKKLQDELERVVGMDRMVSESDLPQLVYLQAMVKETLRLHPAASLVERRLYAESCNVMGYEIPHKAHVIINLWAIGRDPNSWEDAEIFKPERFMERGGSEVDANGLDQNFAWLPFGAGRRTCPGRQLGTLLIEFGLAQLFHCFNWRLPLDDMNGxNQELDMTERFNGITLPRAHELRAIPIPRLECI
B8LNX9_______________LLEKVIEEHVARNDPKMTHDLVDVLLAASAEKDGEFQVSRDSIKGVLFDMLLGGSDTAPTAIEWAMSEALRNxPVMKKLQDELERVVGLGRMVCESDLPRLVYLQAVVKETLRLYPSGPFLTRHLSAASCNVLGYEIPHDTVVLVNDWAIGRDRNSWEDAENFIPERFMERVGSEVDANG-DQNFACLLFGGGRRRCPGQQLGTLIVEFGLAQLLHCFNWRLPLDDINGxNQELDMTERFNGVTMGKARELWAIPTPRLECI

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain