SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene50077

Length: 294 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene50077
TGCTACTCGAATTCAGCTCCTTTCAATCGTACCATCATGTCCGCTCCCAATTCCGCCAACGCCGCGCCATACGATCCATACATCCCTGCTGGAGCAGCGTCGTCTAACCCTACGGGAGAGCGACTAGGCGGAGCTGGCGAGCCGTTAAGAAATGGGAAGACTCAAGCTCTTCAGCAAGAGATCGATGCTACCATCGGTGTCATGCGAGAAAACCTCAACAAAGTCACTGAAAGAGGAGAGCGTCTCGATGCATTGCAAGACAAGACCGACAACCTCGCTATCTCAGCCCAAGGG

Ace file of the UniGene sp_v2.0_unigene50077

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Synaptobrevin n=1 Tax=Glomerella graminicola M1.001 RepID=E3QVV3_COLGM	-	-	2.0e-19	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	42%
Blast2go	synaptobrevin	-	-	9.02444e-27	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell cycle cytokinesis	GO:0033205	Biological Process	9.02444e-27	74%
Blast2go	endocytosis	GO:0006897	Biological Process	9.02444e-27	74%
Blast2go	cell cortex of cell tip	GO:0051285	Cellular Component	9.02444e-27	74%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	9.02444e-27	74%
Blast2go	cytoplasmic vesicle membrane	GO:0030659	Cellular Component	9.02444e-27	74%
Blast2go	cell division site	GO:0032153	Cellular Component	9.02444e-27	74%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	9.02444e-27	74%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NNA8

Fln msg: Distance to subject end: 47 aas, your sequence is shorter than subject: 98 - 222

Fln protein: CYSNSAPFNRTIMSAPNSANAAPYDPYIPAGAASSNPTGERLGGAGEPLRNGKTQALQQEIDATIGVMRENINKVTERGERLDALQDKTDNLAISAQG

Protein Length: 99

Fln nts: TGCTACTCGAATTCAGCTCCTTTCAATCGTACCATCATGTCCGCTCCCAATTCCGCCAACGCCGCGCCATACGATCCATACATCCCTGCTGGAGCAGCGTCGTCTAACCCTACGGGAGAGCGACTAGGCGGAGCTGGCGAGCCGTTAAGAAATGGGAAGACTCAAGCTCTTCAGCAAGAGATCGATGCTACCATCGGTGTCATGCGAGAAAACaTCAACAAAGTCACTGAAAGAGGAGAGCGTCTCGATGCATTGCAAGACAAGACCGACAACCTCGCTATCTCAGCCCAAGGG

Fln Alignment:

AllPineV4_c48993___PLRNGKTQALQQEIDATIGVMRENINKVTERGERLDALQDKTDNLAISAQ
A9NNA8_______________PEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRFQAQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain