SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene49540

Length: 439 nt

Origin of reads: Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene49540
ATAGACGATTGGCGAAAAGTTATACATGCAATCAAGGTTGGGTTTGCACTGTCAGTGGTGTCTCTGTTCTATCTCATGGAGCCTTTATTTAATGGTGTGGGTAATAATGCCATCTGGGCTATCATGACCGTTGTGGTGGTTTTTGAGTTTACTGCAGGTGCCACTCTTATTAAGGGCTTGAATAGAGGAATCGGGGCAGTGCTCGCAGGATCTCTTGGTATATTGGTTGGATGGGTAGCCCAAAGGGCCGGGACAGTAGGAGAACCCATTCTTATCGCTGCTTCGTGTTTCATTCTAGGGGCATCTGCAACATACCTTCGCTTTTTCCCCAAAATAAAGCGCAAATATGATTACGGCGTTGTGATTTTTATCCTGACCTTCAATATGATAACAGTCTCCGGATACCGGGTTGACAACATATTTCGCATGGCTTACGAAC

Ace file of the UniGene sp_v2.0_unigene49540 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	aluminum-activated, malate transporter 12 [Arabidopsis thaliana] sp\|O49696.1\|ALMTC_ARATH RecName: Full=Aluminum-activated malate transporter 12; Short=AtALMT12; AltName: Full=Quick anion channel 1 emb\|CAA17140.1\| putative protein [Arabidopsis thaliana] em	-	-	62%
FL-Next	Isoform 2 of Aluminum-activated malate transporter 12 OS=Arabidopsis thaliana GN=ALMT12	-	-	62%
Blast2go	aluminum-activated malate transporter 12-like	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	stomatal movement	GO:0010118	Biological Process	79%
Blast2go	anion transport	GO:0006820	Biological Process	79%
Blast2go	anion transmembrane transporter activity	GO:0008509	Molecular Function	79%
Blast2go	endomembrane system	GO:0012505	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Thiolase	IPR002155	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Inhibitor of apoptosis-promoting Bax1-related	IPR006214	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O49696-2

Fln msg: Distance to subject end: 90 aas, your sequence is shorter than subject: 146 - 277

Fln protein: IDDWRKVIHAIKVGFALSVVSLFYLMEPLFNGVGNNAIWAIMTVVVVFEFTAGATLIKGLNRGIGAVLAGSLGILVGWVAQRAGTVGEPILIAASCFILGASATYLRFFPKIKRKYDYGVVIFILTFNMITVSGYRVDNIFRMAYE

Protein Length: 147

Fln nts: ATAGACGATTGGCGAAAAGTTATACATGCAATCAAGGTTGGGTTTGCACTGTCAGTGGTGTCTCTGTTCTATCTCATGGAGCCTTTATTTAATGGTGTGGGTAATAATGCCATCTGGGCTATCATGACCGTTGTGGTGGTTTTTGAGTTTACTGCAGGTGCCACTCTTATTAAGGGCTTGAATAGAGGAATCGGGGCAGTGCTCGCAGGATCTCTTGGTATATTGGTTGGATGGGTAGCCCAAAGGGCCGGGACAGTAGGAGAACCCATTCTTATCGCTGCTTCGTGTTTCATTCTAGGGGCATCTGCAACATACCTTCGCTTTTTCCCCAAAATAAAGCGCAAATATGATTACGGCGTTGTGATTTTTATCCTGACCTTCAATATGATAACAGTCTCCGGATACCGGGTTGACAACATATTTCGCATGGCTTACGAAC

Fln Alignment:

AllPineV4_c48357___DDWRKVIHAIKVGFALSVVSLFYLMEPLFNGVGNNAIWAIMTVVVVFEFTAGATLIKGLNRGIGAVLAGSLGILVGWVAQRAGTVGEPILIAASCFILGASATYLRFFPKIKRKYDYGVVIFILTFNMITVSGYRVDNIFRMAYE
O49696-2_____________EDPRRVIHALKVGLSLTLVSLLYLMEPLFKGIGSNAIWAVMTVVVVLEFSAGATLCKGLNRGLGTLIAGSLAFFIEFVANDSGKVLRAIFIGTAVFIIGAAATYIRFIPYIKKNYDYGVVIFLLTFNLITVSSYRVDSVINIAHD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain