SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene49267

Length: 455 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene49267
GAGAGCCGCTGGGAGGGCGAGTGCTGAGGAGCATTTCGGCTTATGTTATGCAGGATGATTTGCTGTTCCCTATGTTGACGGTGGAGGAGACGCTCATGTTCTCGGCGGAGTTTCGGCTGCCGAGGTCTCAGACGAGAACGCAGAAGCTAGCGCGAGTGCAGGTTCTGCTTGACCAACTCGGGCTTCGTGGCGCGGCAAAGCGATCATCGGCGACGAAGGGCACCGTGGGGTGTCCGGCGGAGAGAGGCGGCGGGTGTCCATCGGTATTGATATAATCCACGATCCAATTTGCTGTTCTTGGACGAACCAACCTCTGGGTTGGATTCCACCAGTGCTTTCATGGTTGTCAAGGTGCTGCAGCGCATTGCCCAGACGGGGAGCATCGTGATTCTTTCCATTCACCAACCAAGCTACCGGATTCTTGGACTGCTGGACCGGCTCATTTTGCTGGCACA

Ace file of the UniGene sp_v2.0_unigene49267

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-binding cassette transporter, putative n=1 Tax=Ricinus communis RepID=B9SGV3_RICCO	-	-	2.0e-37	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%
Blast2go	white-brown-complex abc transporter family	-	-	3.9475e-37	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity	GO:0016787	Molecular Function	3.9475e-37	78%

Source	InterPros	Term	Type	Identity
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Pigment precursor permease	IPR005284	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNF9

Fln msg: Separated hits, possible frame ERROR between 185 and 286, Distance to subject end: 390 aas, your sequence is shorter than subject: 151 - 819

Fln protein: EPLGGRVLRSISAYVMQDDLLFPMLTVEETLMFSAEFRLPRSQTRTQKLARVQVLLDQLGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNLLFLDEPTSGLDSTSAFMVVKVLQRIAQTGSIVILSIHQPSYRILGLLDRLILLA

Protein Length: 152

Fln nts: GAGAGCCGCTGGGAGGGCGAGTGCTGAGGAGCATTTCGGCTTATGTTATGCAGGATGATTTGCTGTTCCCTATGTTGACGGTGGAGGAGACGCTCATGTTCTCGGCGGAGTTTCGGCTGCCGAGGTCTCAGACGAGAACGCAGAAGCTAGCGCGAGTGCAGGTTCTGCTTGACCAACTCGGGCTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCAATTTGCTGTTCTTGGACGAACCAACCTCTGGGTTGGATTCCACCAGTGCTTTCATGGTTGTCAAGGTGCTGCAGCGCATTGCCCAGACGGGGAGCATCGTGATTCTTTCCATTCACCAACCAAGCTACCGGATTCTTGGACTGCTGGACCGGCTCATTTTGCTGGCACA

Fln Alignment:

AllPineV4_c48030___RVLRSISAYVMQDDLLFPMLTVEETLMFSAEFRLPRSQTRTQKLARVQVLLDQLGLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNLLFLDEPTSGLDSTSAFMVVKVLQRIAQTGSIVILSIHQPS
B8LNF9_______________KALKRRIGFVTQDDVLFPHLTVRETLTYTALLRLPRTLTKHQREQRAQEVVRELGLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSLLFLDEPTSGLDSTTALRIVQMLHDIARAGRTVVSTIHQPS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain