SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene48961

Length: 322 nt

Origin of reads: Biogeco1 v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene48961
CGGAGTGGGTACTCTGGCGTTGCAACATTTTGTAAGGTAAATGCTGCATTTTCAAGTACAGAAGTTGCACTGCCCGTTGCAGTAGAGGAAGGATTCACTGGTCTTTTGAAGTGCCCAAGAGTGGGGAAACTAAAGCAACAGTTAGTAGTATCAGTGATTATGGGGAAGTTCAAACACTGGGGTGTCTTACAAGACAGGAACTTCTGAAGCTTGACAGTGAAGGTCGTTGTCTTATCACAGATCATGGACATTTTGTTCTGTTCAATATTTATGGGCCATGTGTGCAGCCCGGCGATTCAGAGCGCTTTCAATTCAAGCTCAA

Ace file of the UniGene sp_v2.0_unigene48961 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ap endonuclease, putative n=1 Tax=Ricinus communis RepID=B9S6N7_RICCO	-	-	3.0e-26	69%
FL-Next	tr=Ap endonuclease, putative; Ricinus communis (Castor bean).	-	-	0.0	67%
Blast2go	dna-(apurinic or apyrimidinic site) lyase 2-like	-	-	6.97827e-26	78%

Source	InterPros	Term	Type	Identity
Sma3		IPR000097	-	-
Sma3	Exodeoxyribonuclease III xth	IPR004808	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Zinc finger, GRF-type	IPR010666	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9S6N7

Fln msg: Separated hits, possible frame ERROR between 147 and 192, Distance to subject end: 446 aas, your sequence is shorter than subject: 107 - 586

Fln protein: RSGYSGVATFCKVNAAFSSTEVALPVAVEEGFTGLLKCPRVGKLKQQLxxxxxxxxxxxxxxxxRQELLKLDSEGRCLITDHGHFVLFNIYGPCVQPGDSERFQFKL

Protein Length: 108

Fln nts: CGGAGTGGGTACTCTGGCGTTGCAACATTTTGTAAGGTAAATGCTGCATTTTCAAGTACAGAAGTTGCACTGCCCGTTGCAGTAGAGGAAGGATTCACTGGTCTTTTGAAGTGCCCAAGAGTGGGGAAACTAAAGCAACAGTTAGTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAAGACAGGAACTTCTGAAGCTTGACAGTGAAGGTCGTTGTCTTATCACAGATCATGGACATTTTGTTCTGTTCAATATTTATGGGCCATGTGTGCAGCCCGGCGATTCAGAGCGCTTTCAATTCAAGCTCAA

Fln Alignment:

AllPineV4_c47669___RSGYSGVATFCKVNAAFSSTEVALPVAVEEGFTGLLKCPRVGKLKQQLVxxxxxxxxxxxxxxxRQELLKLDSEGRCLITDHGHFVLFNIYGPCVQPGDSERFQFKL
B9S6N7_______________RTGYSGVATFCRVKSAFSSSEVALPVGAEEGFTGLVDCSRNGKHEMPVVxxxxxxxxxxxxxxxKDELLKIDSEGRCIITDHGHFVLFNLYGPRAESDDTERIHFKL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain